Recombination rate and selection strength in HIV intra-patient evolution. by Richard A Neher, Thomas Leitner

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Eco-evolutionary dynamics of adapting pathogens and host immunity by Pierre Barrat-Charlaix, Richard A Neher

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Soil Microarthropods and Soil Health: Intersection of Decomposition and Pest Suppression in Agroecosystems by Deborah A. Neher, Mary E. Barbercheck

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Organic Amendments Alter Soil Hydrology and Belowground Microbiome of Tomato (<i>Solanum lycopersicum</i>) by Taylor Readyhough, Deborah A. Neher, Tucker Andrews

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Inferring HIV escape rates from multi-locus genotype data by Taylor A Kessinger, Alan S Perelson, Richard A Neher

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The pattern of anti-tuberculosis drug resistance in patients traeted at an urban tuberculosis clinic Kathmandu valley by Bhawana Shrestha, A. Neher, O. Breyer, K. Feldmann

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Phylodynamic theory of persistence, extinction and speciation of rapidly adapting pathogens by Le Yan, Richard A Neher, Boris I Shraiman

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Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition by Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Richard A. Neher, Trevor Bedford, Trevor Bedford, John Huddleston

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TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. by Pierre Barrat-Charlaix, Timothy G Vaughan, Richard A Neher

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Predicting evolution from the shape of genealogical trees by Richard A Neher, Colin A Russell, Boris I Shraiman

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Mammary microbiome of lactating organic dairy cows varies by time, tissue site, and infection status. by Tucker Andrews, Deborah A Neher, Thomas R Weicht, John W Barlow

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Potential impact of seasonal forcing on a SARS-CoV-2 pandemic by Richard A. Neher, Robert Dyrdak, Valentin Druelle, Emma B. Hodcroft, Jan Albert

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Correlated evolution of nearby residues in Drosophilid proteins. by Benjamin Callahan, Richard A Neher, Doris Bachtrog, Peter Andolfatto, Boris I Shraiman

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Relationship between facility type and bulk tank milk bacteriology, udder health, udder hygiene, and milk production on Vermont organic dairy farms by Caitlin E. Jeffrey, Tucker Andrews, Sandra M. Godden, Deborah A. Neher, John W. Barlow

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Organic Farm Bedded Pack System Microbiomes: A Case Study with Comparisons to Similar and Different Bedded Packs by Deborah A. Neher, Tucker D. Andrews, Thomas R. Weicht, Asa Hurd, John W. Barlow

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Population genomics of intrapatient HIV-1 evolution by Fabio Zanini, Johanna Brodin, Lina Thebo, Christa Lanz, Göran Bratt, Jan Albert, Richard A Neher

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Challenges with using primer IDs to improve accuracy of next generation sequencing. by Johanna Brodin, Charlotte Hedskog, Alexander Heddini, Emmanuel Benard, Richard A Neher, Mattias Mild, Jan Albert

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Establishment and stability of the latent HIV-1 DNA reservoir by Johanna Brodin, Fabio Zanini, Lina Thebo, Christa Lanz, Göran Bratt, Richard A Neher, Jan Albert

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2019-Novel Coronavirus (2019-nCoV): estimating the case fatality rate – a word of caution by Manuel Battegay, Richard Kuehl, Sarah Tschudin-Sutter, Hans H. Hirsch, Andreas F. Widmer, Richard A. Neher

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On-farm corn stover and cover crop residue recycling with biostimulant Re-Gen increases corn yields and resultant milk yields in multi-year dairy cattle farm trials by William S. Gibson, Amy S. Ziobron, Noah E. Olson, Deborah A. Neher, Charles F. Smith, Victoria I. Holden

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