Floral pathway integrator gene expression mediates gradual transmission of environmental and endogenous cues to flowering time by Aalt D.J. van Dijk, Jaap Molenaar

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Beyond sequence: Structure-based machine learning by Janani Durairaj, Dick de Ridder, Aalt D.J. van Dijk

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Interactome-wide prediction of protein-protein binding sites reveals effects of protein sequence variation in Arabidopsis thaliana. by Felipe Leal Valentim, Frank Neven, Peter Boyen, Aalt D J van Dijk

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Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana by Muhammad Farooq, Muhammad Farooq, Aalt D. J. van Dijk, Aalt D. J. van Dijk, Harm Nijveen, Mark G. M. Aarts, Willem Kruijer, Thu-Phuong Nguyen, Shahid Mansoor, Dick de Ridder

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Mutational robustness of gene regulatory networks. by Aalt D J van Dijk, Simon van Mourik, Roeland C H J van Ham

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Inferring the gene network underlying the branching of tomato inflorescence. by Laura Astola, Hans Stigter, Aalt D J van Dijk, Raymond van Daelen, Jaap Molenaar

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Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics by Aalt D. J. van Dijk, Shin-Han Shiu, Shin-Han Shiu, Dick de Ridder

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Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 2; peer review: 1 approved, 2 approved with reservations] by Aalt D.J. van Dijk, Shahid Mansoor, Muhammad Farooq, Dick de Ridder, Harm Nijveen

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Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana by Niels Aerts, Suzanne de Bruijn, Hilda van Mourik, Gerco C. Angenent, Aalt D. J. van Dijk

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Biological process annotation of proteins across the plant kingdom by Joachim W. Bargsten, Edouard I. Severing, Jan-Peter Nap, Gabino F. Sanchez-Perez, Aalt D.J. van Dijk

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Simulation of organ patterning on the floral meristem using a polar auxin transport model. by Simon van Mourik, Kerstin Kaufmann, Aalt D J van Dijk, Gerco C Angenent, Roeland M H Merks, Jaap Molenaar

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Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction. by Aalt D J van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C H J van Ham, Gerco C Angenent, Richard G H Immink

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Predicting the impact of alternative splicing on plant MADS domain protein function. by Edouard I Severing, Aalt D J van Dijk, Giuseppa Morabito, Jacqueline Busscher-Lange, Richard G H Immink, Roeland C H J van Ham

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Chasing breeding footprints through structural variations in <i>Cucumis melo</i> and wild relatives by Sevgin Demirci, Roven Rommel Fuentes, Willem van Dooijeweert, Saulo Aflitos, Elio Schijlen, Thamara Hesselink, Dick de Ridder, Aalt D J van Dijk, Sander Peters

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Bayesian Markov Random Field analysis for protein function prediction based on network data. by Yiannis A I Kourmpetis, Aalt D J van Dijk, Marco C A M Bink, Roeland C H J van Ham, Cajo J F ter Braak

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A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network. by Felipe Leal Valentim, Simon van Mourik, David Posé, Min C Kim, Markus Schmid, Roeland C H J van Ham, Marco Busscher, Gabino F Sanchez-Perez, Jaap Molenaar, Gerco C Angenent, Richard G H Immink, Aalt D J van Dijk

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