Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth. by Roeland M H Merks, Erica D Perryn, Abbas Shirinifard, James A Glazier

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Computer simulations of cell sorting due to differential adhesion. by Ying Zhang, Gilberto L Thomas, Maciej Swat, Abbas Shirinifard, James A Glazier

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Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D. by Maciej H Swat, Gilberto L Thomas, Abbas Shirinifard, Sherry G Clendenon, James A Glazier

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3D multi-cell simulation of tumor growth and angiogenesis. by Abbas Shirinifard, J Scott Gens, Benjamin L Zaitlen, Nikodem J Popławski, Maciej Swat, James A Glazier

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Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study. by Abbas Shirinifard, James Alexander Glazier, Maciej Swat, J Scott Gens, Fereydoon Family, Yi Jiang, Hans E Grossniklaus

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Platelet-derived chemokines promote skeletal muscle regeneration by guiding neutrophil recruitment to injured muscles by Flavia A. Graca, Anna Stephan, Benjamin A. Minden-Birkenmaier, Abbas Shirinifard, Yong-Dong Wang, Fabio Demontis, Myriam Labelle

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Progressive development of melanoma-induced cachexia differentially impacts organ systems in mice by Flavia A. Graca, Anna Stephan, Yong-Dong Wang, Abbas Shirinifard, Jianqin Jiao, Peter Vogel, Myriam Labelle, Fabio Demontis

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Modulation of protease expression by the transcription factor Ptx1/PITX regulates protein quality control during aging by Jianqin Jiao, Michelle Curley, Flavia A. Graca, Maricela Robles-Murguia, Abbas Shirinifard, David Finkelstein, Beisi Xu, Yiping Fan, Fabio Demontis

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Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures by Lu Wang, Daniel Hiler, Beisi Xu, Issam AlDiri, Xiang Chen, Xin Zhou, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, András Sablauer, Suresh Thiagarajan, Marie-Elizabeth Barabas, Jiakun Zhang, Dianna Johnson, Sharon Frase, Michael A. Dyer

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An adaptive stress response that confers cellular resilience to decreased ubiquitination by Liam C. Hunt, Vishwajeeth Pagala, Anna Stephan, Boer Xie, Kiran Kodali, Kanisha Kavdia, Yong-Dong Wang, Abbas Shirinifard, Michelle Curley, Flavia A. Graca, Yingxue Fu, Suresh Poudel, Yuxin Li, Xusheng Wang, Haiyan Tan, Junmin Peng, Fabio Demontis

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Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes by Hong Wang, Alexander K. Diaz, Timothy I. Shaw, Yuxin Li, Mingming Niu, Ji-Hoon Cho, Barbara S. Paugh, Yang Zhang, Jeffrey Sifford, Bing Bai, Zhiping Wu, Haiyan Tan, Suiping Zhou, Laura D. Hover, Heather S. Tillman, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer, Vishwajeeth Pagala, Anthony A. High, Xusheng Wang, Chunliang Li, Suzanne J. Baker, Junmin Peng

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Targeting the DNA Repair Pathway in Ewing Sarcoma by Elizabeth Stewart, Ross Goshorn, Cori Bradley, Lyra M. Griffiths, Claudia Benavente, Nathaniel R. Twarog, Gregory M. Miller, William Caufield, Burgess B. Freeman III, Armita Bahrami, Alberto Pappo, Jianrong Wu, Amos Loh, Åsa Karlström, Chris Calabrese, Brittney Gordon, Lyudmila Tsurkan, M. Jason Hatfield, Philip M. Potter, Scott E. Snyder, Suresh Thiagarajan, Abbas Shirinifard, Andras Sablauer, Anang A. Shelat, Michael A. Dyer

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