The ethics of instantaneous contact tracing using mobile phone apps in the control of the COVID-19 pandemic by Parker, M, Fraser, C, Abeler-Dörner, L, Bonsall, D

Learning patterns of HIV-1 resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning by Igiraneza, AB, Zacharopoulou, P, Hinch, R, Wymant, C, Abeler-Dörner, L, Frater, J, Fraser, C

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing by Ferretti, L, Wymant, C, Kendall, M, Zhao, L, Nurtay, A, Parker, M, Abeler-Dörner, L, Bonsall, D, Fraser, C

Epidemiological changes on the Isle of Wight after the launch of the NHS Test and Trace programme: a preliminary analysis by Kendall, M, Milsom, L, Abeler-Dörner, L, Wymant, C, Ferretti, L, Briers, M, Holmes, C, Bonsall, D, Abeler, J, Fraser, C

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models by Hinch, R, Panovska-Griffiths, J, Probert, WJM, Ferretti, L, Wymant, C, Di Lauro, F, Baya, N, Ghafari, M, Abeler-Dörner, L, Fraser, C

The autophagy gene Atg16l1 differentially regulates Treg and TH2 cells to control intestinal inflammation. by Maloy, K, Kabat, A, Harrison, O, Riffelmacher, T, Moghaddam, A, Pearson, C, Laing, A, Abeler-Dorner, L, Forman, S, Grencis, R, Sattentau, Q, Simon, A, Pott, J

Time to evaluate COVID-19 contact-tracing apps by Colizza, V, Grill, E, Mikolajczyk, R, Cattuto, C, Kucharski, A, Riley, S, Kendall, M, Lythgoe, K, Bonsall, D, Wymant, C, Abeler-Dörner, L, Ferretti, L, Fraser, C

High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation by Abeler-Dörner, L, Laing, A, Lorenc, A, Bull, K, Crockford, T, Cawthorne, E, Edmans, M, Cornall, R, Morón, B, Song-Zhao, G, Abeler, J, Powrie, F, Et al.

Phylogenetic and demographic characterization of directed HIV-1 transmission using deep sequences from high-risk and general population cohorts/groups in Uganda by Bbosa, N, Ssemwanga, D, Ssekagiri, A, Xi, X, Mayanja, Y, Bahemuka, U, Seeley, J, Pillay, D, Abeler-Dörner, L, Golubchik, T, Fraser, C, Kaleebu, P, Ratmann, O, PANGEA Consortium

Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts by Ferretti, L, Wymant, C, Petrie, J, Tsallis, D, Kendall, M, Ledda, A, Di Lauro, F, Fowler, A, Di Francia, A, Abeler-Dörner, L, Charalambides, M, Briers, M, Fraser, C

Prolidase deficiency causes spontaneous T cell activation and lupus-like autoimmunity by Hodgson, R, Crockford, TL, Bhandari, A, Kepple, JD, Back, J, Cawthorne, E, Abeler-Dörner, L, Laing, AG, Clare, S, Speak, A, Adams, DJ, Dougan, G, Hayday, AC, Deobagkar-Lele, M, Cornall, RJ, Bull, KR

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study by Kim, S, Kigozi, G, Martin, MA, Galiwango, RM, Quinn, TC, Redd, AD, Ssekubugu, R, Bonsall, D, Ssemwanga, D, Rambaut, A, Herbeck, JT, Reynolds, SJ, Foley, B, Abeler-Dörner, L, Fraser, C, Ratmann, O, Kagaayi, J, Laeyendecker, O, Grabowski, MK

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis by Ratmann, O, Grabowski, M, Hall, M, Golubchik, T, Wymant, C, Abeler-Dörner, L, Bonsall, D, Hoppe, A, Brown, A, De Oliveira, T, Gall, A, Kellam, P, Pillay, D, Kagaayi, J, Kigozi, G, Quinn, T, Wawer, M, Laeyendecker, O, Serwadda, D, Gray, R, Fraser, C, Pangea Consortium And Rakai Health Sciences Program

A comprehensive genomics solution for HIV surveillance and clinical monitoring in low income settings by Bonsall, D, Golubchik, T, de Cesare, M, Limbada, M, Kosloff, B, MacIntyre-Cockett, G, Hall, M, Wymant, C, Ansari, MA, Abeler-Dörner, L, Schaap, A, Brown, A, Barnes, E, Piwowar-Manning, E, Eshleman, S, Wilson, E, Emel, L, Hayes, R, Fidler, S, Ayles, H, Bowden, R, Fraser, C, HPTN 071 (PopART) team

Quantifying the contribution of different aged men and women to onwards transmission of HIV-1 in generalised epidemics in sub-Saharan Africa: A modelling and phylogenetics approach... by Probert, W, Hall, M, Xi, X, Sauter, R, Golubchik, T, Bonsall, D, Abeler-Dorner, L, Pickles, M, Cori, A, Bwalya, J, Floyd, S, Mandla, N, Shanaube, K, Yang, B, Ayles, H, Bock, P, Donnell, D, Grabowski, K, Pillay, D, Rambaut, A, Ratmann, O, Fidler, S, Hayes, R, Fraser, C, ePANGEA-HIV consortium

OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing by Hinch, R, Probert, WJM, Nurtay, A, Kendall, M, Wymant, C, Hall, M, Lythgoe, K, Bulas Cruz, A, Zhao, L, Stewart, A, Ferretti, L, Montero, D, Warren, J, Mather, N, Abueg, M, Wu, N, Legat, O, Bentley, K, Mead, T, Van-Vuuren, K, Feldner-Busztin, D, Ristori, T, Finkelstein, A, Bonsall, DG, Abeler-Dörner, L, Fraser, C

SARS-CoV-2 within-host diversity and transmission by Lythgoe, KA, Hall, M, Ferretti, L, de Cesare, M, MacIntyre-Cockett, G, Trebes, A, Andersson, M, Otecko, N, Wise, EL, Moore, N, Lynch, J, Kidd, S, Cortes, N, Mori, M, Williams, R, Vernet, G, Justice, A, Green, A, Nicholls, SM, Ansari, MA, Abeler-Dörner, L, Moore, CE, Peto, TEA, Eyre, DW, Shaw, R, Simmonds, P, Buck, D, Todd, JA, Connor, TR, Ashraf, S, da Silva Filipe, A, Shepherd, J, Thomson, EC, Bonsall, D, Fraser, C, Golubchik, T

SARS-CoV-2 within-host diversity and transmission by Lythgoe, KA, Hall, M, Ferretti, L, de Cesare, M, MacIntyre-Cockett, G, Trebes, A, Andersson, M, Otecko, N, Wise, EL, Moore, N, Lynch, J, Kidd, S, Cortes, N, Mori, M, Williams, R, Vernet, G, Justice, A, Green, A, Nicholls, SM, Ansari, MA, Abeler-Dörner, L, Moore, CE, Peto, TEA, Eyre, DW, Shaw, R, Simmonds, P, Buck, D, Todd, JA, Oxford Virus Sequencing Analysis Group (OVSG), Connor, TR, Ashraf, S, da Silva Filipe, A, Shepherd, J, Thomson, EC, COVID-19 Genomics UK (COG-UK) Consortium, Bonsall, D, Fraser, C, Golubchik, T