Evaluation of strain circulation and the epidemiology of enteric fever caused by Karkey, A, Abhilasha Karkey

Perspectives of pharmacy employees on an inappropriate use of antimicrobials in Kathmandu, Nepal. by Nistha Shrestha, Sulochana Manandhar, Nhukesh Maharjan, Devina Twati, Sabina Dongol, Buddha Basnyat, Stephen Baker, Abhilasha Karkey

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Use of antimicrobials during the COVID-19 pandemic: A qualitative study among stakeholders in Nepal by Binod Dhungel, Upendra Thapa Shrestha, Sanjib Adhikari, Nabaraj Adhikari, Alisha Bhattarai, Sunil Pokharel, Abhilasha Karkey, Direk Limmathurotsakul, Prakash Ghimire, Komal Raj Rijal, Phaik Yeong Cheah, Christopher Pell, Bipin Adhikari

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Use of antimicrobials during the COVID-19 pandemic: A qualitative study among stakeholders in Nepal. by Binod Dhungel, Upendra Thapa Shrestha, Sanjib Adhikari, Nabaraj Adhikari, Alisha Bhattarai, Sunil Pokharel, Abhilasha Karkey, Direk Limmathurotsakul, Prakash Ghimire, Komal Raj Rijal, Phaik Yeong Cheah, Christopher Pell, Bipin Adhikari

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Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever by Elin Näsström, Nga Tran Vu Thieu, Sabina Dongol, Abhilasha Karkey, Phat Voong Vinh, Tuyen Ha Thanh, Anders Johansson, Amit Arjyal, Guy Thwaites, Christiane Dolecek, Buddha Basnyat, Stephen Baker, Henrik Antti

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Identifying context-specific domains for assessing antimicrobial stewardship programmes in Asia: protocol for a scoping review by H Rogier van Doorn, Payal K Patel, Ralalicia Limato, Direk Limmathurotsakul, Abhilasha Karkey, Elizabeth Dodds Ashley, Deverick Anderson, Huong Thi Lan Vu, Raph L Hamers, Twisha S Patel, Fernanda C Lessa

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Diagnostic host gene signature for distinguishing enteric fever from other febrile diseases by Christoph J Blohmke, Julius Muller, Malick M Gibani, Hazel Dobinson, Sonu Shrestha, Soumya Perinparajah, Celina Jin, Harri Hughes, Luke Blackwell, Sabina Dongol, Abhilasha Karkey, Fernanda Schreiber, Derek Pickard, Buddha Basnyat, Gordon Dougan, Stephen Baker, Andrew J Pollard, Thomas C Darton

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Social cohesion among healthcare workers during COVID-19: Qualitative research in Indonesia, Nepal, and Vietnam by Ha Nguyen Thanh, Ida Ayu Sutrisni, Samita Rijal, Aakriti Pandey, Thao Phuong Tran, Ragil Dien, Yen Nguyen Thi Hong, Diana Timoria, Dewi Friska, Aria Kekalih, Claus Bogh, Abhilasha Karkey, Raph L. Hamers, Mary Chambers, Sonia Lewycka, Jennifer Ilo Van Nuil

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Direct inference and control of genetic population structure from RNA sequencing data by Muhamad Fachrul, Abhilasha Karkey, Mila Shakya, Louise M. Judd, Taylor Harshegyi, Kar Seng Sim, Susan Tonks, Sabina Dongol, Rajendra Shrestha, Agus Salim, STRATAA study group, Stephen Baker, Andrew J. Pollard, Chiea Chuen Khor, Christiane Dolecek, Buddha Basnyat, Sarah J. Dunstan, Kathryn E. Holt, Michael Inouye

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A high‐resolution genomic analysis of multidrug‐resistant hospital outbreaks of Klebsiella pneumoniae by Hao Chung The, Abhilasha Karkey, Duy Pham Thanh, Christine J Boinett, Amy K Cain, Matthew Ellington, Kate S Baker, Sabina Dongol, Corinne Thompson, Simon R Harris, Thibaut Jombart, Tu Le Thi Phuong, Nhu Tran Do Hoang, Tuyen Ha Thanh, Shrijana Shretha, Suchita Joshi, Buddha Basnyat, Guy Thwaites, Nicholas R Thomson, Maia A Rabaa, Stephen Baker

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Clinical and laboratory factors associated with neonatal sepsis mortality at a major Vietnamese children's hospital. by Nguyen Duc Toan, Thomas C Darton, Nguyen Hoang Thien Huong, Le Thanh Hoang Nhat, To Nguyen Thi Nguyen, Ha Thanh Tuyen, Le Quoc Thinh, Nguyen Kien Mau, Pham Thi Thanh Tam, Cam Ngoc Phuong, Le Nguyen Thanh Nhan, Ngo Ngoc Quang Minh, Ngo Minh Xuan, Tang Chi Thuong, Nguyen Thanh Hung, Christine Boinett, Stephen Reece, Abhilasha Karkey, Jeremy N Day, Stephen Baker

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Clinical and laboratory factors associated with neonatal sepsis mortality at a major Vietnamese children’s hospital by Nguyen Duc Toan, Thomas C. Darton, Nguyen Hoang Thien Huong, Le Thanh Hoang Nhat, To Nguyen Thi Nguyen, Ha Thanh Tuyen, Le Quoc Thinh, Nguyen Kien Mau, Pham Thi Thanh Tam, Cam Ngoc Phuong, Le Nguyen Thanh Nhan, Ngo Ngoc Quang Minh, Ngo Minh Xuan, Tang Chi Thuong, Nguyen Thanh Hung, Christine Boinett, Stephen Reece, Abhilasha Karkey, Jeremy N. Day, Stephen Baker

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ACORN (A Clinically-Oriented Antimicrobial Resistance Surveillance Network) II: protocol for case based antimicrobial resistance surveillance [version 2; peer review: 2 approved] by Andrea Lay-Hoon Kwa, Jeanette Teo, Oon Tek Ng, Kalisvar Marimuthu, Suwatthiya Kitsaran, Shawn Vasoo, Pope Kosalaraksa, Siriluck Anunnatsiri, Pitak Santanirand, Elizabeth A. Ashley, Darunee Chotiprasitsakul, Hock Hin Chua, Rongpong Plongla, Ke Juin Wong, Xun Ting Tiong, Naomi Waithira, Helmi Bin Sulaiman, Sasheela Sri La Sri Ponnampalavanar, Zeti Norfidiyati Salmuna, Prapass Wannapinij, Mohd Zulfakar Mazlan, Mohd Zaki Bin Mohd Zaili, Giri Shan Rajahram, Nevio Sarmento, Joshua R. Francis, Tessa Oakley, Helio Guterres, Ari Tilman, Jennifer Yan, Madiha Hashmi, Muhammad Osama Rehman Khalid, Azizullah Khan Dhiloo, Syed Faisal Mahmood, Inke Nadia D. Lubis, Ambreen Fatima, Cybele L. Abad, Hendri Wijaya, Cecilia C. Maramba Lazarte, Arthur Dessi Roman, Rosmonaliza Asli, Gazi Md. Salahuddin Mamun, Khurelbaatar Nyamdavaa, Muhd Haziq Fikry bin Haji Abdul Momin, Sotharith Bory, Yin Mo, Ulziijargal Gurjav, Lalit Gupta, George M. Varghese, Robert Sinto, Pratik Tantia, Basudha Khanal, Yohei Doi, Jezreel Lazaro, Greco Malijan, Sumudu Withanage, Samanmalee Gunasekara, Yonghong Xiao, Po Yu Liu, Minggui Wang, Yang Cao, Ying Ding, David L. Paterson, Jill Hopkins, Sue J. Lee, H. Rogier van Doorn, Paul Turner, Raph L. Hamers, Claire L. Ling, Yoel Lubell, Tamalee Roberts, Samuel Akech, Abhilasha Karkey, Japheth Opintan, Samantha Lissauer, Sergey Eremin, Iruka Okeke, Li Yang Hsu, Barbara Tornimbene, Minh Yen Lam, Louise Thwaites, Tieu Kieu Pham, Ngoc Thach Pham

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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes by Megan E Carey, Zoe A Dyson, Danielle J Ingle, Afreenish Amir, Mabel K Aworh, Marie Anne Chattaway, Ka Lip Chew, John A Crump, Nicholas A Feasey, Benjamin P Howden, Karen H Keddy, Mailis Maes, Christopher M Parry, Sandra Van Puyvelde, Hattie E Webb, Ayorinde Oluwatobiloba Afolayan, Anna P Alexander, Shalini Anandan, Jason R Andrews, Philip M Ashton, Buddha Basnyat, Ashish Bavdekar, Isaac I Bogoch, John D Clemens, Kesia Esther da Silva, Anuradha De, Joep de Ligt, Paula Lucia Diaz Guevara, Christiane Dolecek, Shanta Dutta, Marthie M Ehlers, Louise Francois Watkins, Denise O Garrett, Gauri Godbole, Melita A Gordon, Andrew R Greenhill, Chelsey Griffin, Madhu Gupta, Rene S Hendriksen, Robert S Heyderman, Yogesh Hooda, Juan Carlos Hormazabal, Odion O Ikhimiukor, Junaid Iqbal, Jobin John Jacob, Claire Jenkins, Dasaratha Ramaiah Jinka, Jacob John, Gagandeep Kang, Abdoulie Kanteh, Arti Kapil, Abhilasha Karkey, Samuel Kariuki, Robert A Kingsley, Roshine Mary Koshy, AC Lauer, Myron M Levine, Ravikumar Kadahalli Lingegowda, Stephen P Luby, Grant Austin Mackenzie, Tapfumanei Mashe, Chisomo Msefula, Ankur Mutreja, Geetha Nagaraj, Savitha Nagaraj, Satheesh Nair, Take K Naseri, Susana Nimarota-Brown, Elisabeth Njamkepo, Iruka N Okeke, Sulochana Putli Bai Perumal, Andrew J Pollard, Agila Kumari Pragasam, Firdausi Qadri, Farah N Qamar, Sadia Isfat Ara Rahman, Savitra Devi Rambocus, David A Rasko, Pallab Ray, Roy Robins-Browne, Temsunaro Rongsen-Chandola, Jean Pierre Rutanga, Samir K Saha, Senjuti Saha, Karnika Saigal, Mohammad Saiful Islam Sajib, Jessica C Seidman, Jivan Shakya, Varun Shamanna, Jayanthi Shastri, Rajeev Shrestha, Sonia Sia, Michael J Sikorski, Ashita Singh, Anthony M Smith, Kaitlin A Tagg, Dipesh Tamrakar, Arif Mohammed Tanmoy, Maria Thomas, Mathew S Thomas, Robert Thomsen, Nicholas R Thomson, Siaosi Tupua, Krista Vaidya, Mary Valcanis, Balaji Veeraraghavan, François-Xavier Weill, Jackie Wright, Gordon Dougan, Silvia Argimón, Jacqueline A Keane, David M Aanensen, Stephen Baker, Kathryn E Holt, Global Typhoid Genomics Consortium Group Authorship

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