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Getting Up to Speed: Rapid Pathogen and Antimicrobial Resistance Diagnostics in Sepsis Dahkki Mariana P. Liborio, Patrick N. A. Harris, Chitra Ravi, Adam D. Irwin

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Gram-negative neonatal sepsis in low- and lower-middle-income countries and WHO empirical antibiotic recommendations: A systematic review and meta-analysis. Dahkki Sophie C H Wen, Yukiko Ezure, Lauren Rolley, Geoff Spurling, Colleen L Lau, Saba Riaz, David L Paterson, Adam D Irwin

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MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction Dahkki Valentine Murigneux, Leah W. Roberts, Brian M. Forde, Minh-Duy Phan, Nguyen Thi Khanh Nhu, Adam D. Irwin, Patrick N. A. Harris, David L. Paterson, Mark A. Schembri, David M. Whiley, Scott A. Beatson

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Optimising Treatment Outcomes for Children and Adults Through Rapid Genome Sequencing of Sepsis Pathogens. A Study Protocol for a Prospective, Multi-Centre Trial (DIRECT) Dahkki Adam D. Irwin, Adam D. Irwin, Lachlan J. M. Coin, Lachlan J. M. Coin, Patrick N. A. Harris, Menino Osbert Cotta, Michelle J. Bauer, Cameron Buckley, Ross Balch, Peter Kruger, Jason Meyer, Kiran Shekar, Kiran Shekar, Kara Brady, Cheryl Fourie, Natalie Sharp, Luminita Vlad, David Whiley, Scott A. Beatson, Brian M. Forde, David Paterson, Julia Clark, Krispin Hajkowicz, Sainath Raman, Seweryn Bialasiewicz, Jeffrey Lipman, Luregn J. Schlapbach, Luregn J. Schlapbach, Jason A. Roberts

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Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis Dahkki Patrick N. A. Harris, Michelle J. Bauer, Lukas Lüftinger, Stephan Beisken, Brian M. Forde, Ross Balch, Menino Cotta, Luregn Schlapbach, Sainath Raman, Kiran Shekar, Peter Kruger, Jeff Lipman, Seweryn Bialasiewicz, Lachlan Coin, Jason A. Roberts, David L. Paterson, Adam D. Irwin

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High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infection Dahkki Nguyen Thi Khanh Nhu, Minh-Duy Phan, Steven J Hancock, Kate M Peters, Laura Alvarez-Fraga, Brian M Forde, Stacey B Andersen, Thyl Miliya, Patrick NA Harris, Scott A Beatson, Sanmarie Schlebusch, Haakon Bergh, Paul Turner, Annelie Brauner, Benita Westerlund-Wikström, Adam D Irwin, Mark A Schembri

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A convergent evolutionary pathway attenuating cellulose production drives enhanced virulence of some bacteria Dahkki Nguyen Thi Khanh Nhu, M. Arifur Rahman, Kelvin G. K. Goh, Seung Jae Kim, Minh-Duy Phan, Kate M. Peters, Laura Alvarez-Fraga, Steven J. Hancock, Chitra Ravi, Timothy J. Kidd, Matthew J. Sullivan, Katharine M. Irvine, Scott A. Beatson, Matthew J. Sweet, Adam D. Irwin, Jana Vukovic, Glen C. Ulett, Sumaira Z. Hasnain, Mark A. Schembri

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Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA Dahkki Mark R. Davies, Nadia Keller, Stephan Brouwer, Magnus G. Jespersen, Amanda J. Cork, Andrew J. Hayes, Miranda E. Pitt, David M. P. De Oliveira, Nichaela Harbison-Price, Olivia M. Bertolla, Daniel G. Mediati, Bodie F. Curren, George Taiaroa, Jake A. Lacey, Helen V. Smith, Ning-Xia Fang, Lachlan J. M. Coin, Kerrie Stevens, Steven Y. C. Tong, Martina Sanderson-Smith, Jai J. Tree, Adam D. Irwin, Keith Grimwood, Benjamin P. Howden, Amy V. Jennison, Mark J. Walker

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