Showing 1 - 11 results of 11 for search 'Alan P Boyle', query time: 0.04s Refine Results
  1. 1
    SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions

    SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions by Sierra S. Nishizaki, Alan P. Boyle

    Published 2022-08-01
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  2. 2
    MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony

    MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony by Adam G. Diehl, Alan P. Boyle

    Published 2020-09-01
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  3. 3
    A proximity-based graph clustering method for the identification and application of transcription factor clusters

    A proximity-based graph clustering method for the identification and application of transcription factor clusters by Maxwell Spadafore, Kayvan Najarian, Alan P. Boyle

    Published 2017-11-01
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  4. 4
    Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes

    Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes by Adam G. Diehl, Ningxin Ouyang, Alan P. Boyle

    Published 2020-04-01
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  5. 5
    Challenges in screening for de novo noncoding variants contributing to genetically complex phenotypes

    Challenges in screening for de novo noncoding variants contributing to genetically complex phenotypes by Christopher P. Castro, Adam G. Diehl, Alan P. Boyle

    Published 2023-07-01
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  6. 6
    The Inducible lac Operator-Repressor System Is Functional in Zebrafish Cells

    The Inducible lac Operator-Repressor System Is Functional in Zebrafish Cells by Sierra S. Nishizaki, Sierra S. Nishizaki, Torrin L. McDonald, Gregory A. Farnum, Monica J. Holmes, Melissa L. Drexel, Jessica A. Switzenberg, Alan P. Boyle, Alan P. Boyle

    Published 2021-06-01
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  7. 7
    HaplotagLR: An efficient and configurable utility for haplotagging long reads.

    HaplotagLR: An efficient and configurable utility for haplotagging long reads. by Monica J Holmes, Babak Mahjour, Christopher P Castro, Gregory A Farnum, Adam G Diehl, Alan P Boyle

    Published 2024-01-01
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  8. 8
    Cas9 targeted enrichment of mobile elements using nanopore sequencing

    Cas9 targeted enrichment of mobile elements using nanopore sequencing by Torrin L. McDonald, Weichen Zhou, Christopher P. Castro, Camille Mumm, Jessica A. Switzenberg, Ryan E. Mills, Alan P. Boyle

    Published 2021-06-01
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  9. 9
    Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data

    Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data by Tingting Qin, Christopher Lee, Shiting Li, Raymond G. Cavalcante, Peter Orchard, Heming Yao, Hanrui Zhang, Shuze Wang, Snehal Patil, Alan P. Boyle, Maureen A. Sartor

    Published 2022-04-01
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  10. 10
    SquiggleNet: real-time, direct classification of nanopore signals

    SquiggleNet: real-time, direct classification of nanopore signals by Yuwei Bao, Jack Wadden, John R. Erb-Downward, Piyush Ranjan, Weichen Zhou, Torrin L. McDonald, Ryan E. Mills, Alan P. Boyle, Robert P. Dickson, David Blaauw, Joshua D. Welch

    Published 2021-10-01
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  11. 11
    Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants

    Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants by Jessica C. McAfee, Sool Lee, Jiseok Lee, Jessica L. Bell, Oleh Krupa, Jessica Davis, Kimberly Insigne, Marielle L. Bond, Nanxiang Zhao, Alan P. Boyle, Douglas H. Phanstiel, Michael I. Love, Jason L. Stein, W. Brad Ruzicka, Jose Davila-Velderrain, Sriram Kosuri, Hyejung Won

    Published 2023-10-01
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