Altered gene expression in excitatory neurons is associated with Alzheimer's disease and its higher incidence in women by A. Xavier Garcia, Jielin Xu, Feixiong Cheng, Eytan Ruppin, Alejandro A. Schäffer

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In vitro and in vivo identification of clinically approved drugs that modify ACE2 expression by Sanju Sinha, Kuoyuan Cheng, Alejandro A Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin

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Outcome differences by sex in oncology clinical trials by Ashwin V. Kammula, Alejandro A. Schäffer, Padma Sheila Rajagopal, Razelle Kurzrock, Eytan Ruppin

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GRAF-pop: A Fast Distance-Based Method To Infer Subject Ancestry from Multiple Genotype Datasets Without Principal Components Analysis by Yumi Jin, Alejandro A. Schaffer, Michael Feolo, J. Bradley Holmes, Brandi L. Kattman

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Stable Karyotypes in Epithelial Cancer Cell Lines Despite High Rates of Ongoing Structural and Numerical Chromosomal Instability by Anna V. Roschke, Kristen Stover, Giovanni Tonon, Alejandro A. Schäffer, Ilan R. Kirsch

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Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics. by Salim Akhter Chowdhury, Stanley E Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A Schäffer, Russell Schwartz

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Optimizing cancer immunotherapy response prediction by tumor aneuploidy score and fraction of copy number alterations by Tian-Gen Chang, Yingying Cao, Eldad D. Shulman, Uri Ben-David, Alejandro A. Schäffer, Eytan Ruppin

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Strain level microbial detection and quantification with applications to single cell metagenomics by Kaiyuan Zhu, Alejandro A. Schäffer, Welles Robinson, Junyan Xu, Eytan Ruppin, A. Funda Ergun, Yuzhen Ye, S. Cenk Sahinalp

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A Calculator for COVID-19 Severity Prediction Based on Patient Risk Factors and Number of Vaccines Received by Ariel Israel, Alejandro A. Schäffer, Eugene Merzon, Ilan Green, Eli Magen, Avivit Golan-Cohen, Shlomo Vinker, Eytan Ruppin

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Pan-Cancer Analysis of Patient Tumor Single-Cell Transcriptomes Identifies Promising Selective and Safe Chimeric Antigen Receptor Targets in Head and Neck Cancer by Sanna Madan, Sanju Sinha, Tiangen Chang, J. Silvio Gutkind, Ezra E. W. Cohen, Alejandro A. Schäffer, Eytan Ruppin

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VADR: validation and annotation of virus sequence submissions to GenBank by Alejandro A. Schäffer, Eneida L. Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki

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Genome-wide DNA methylation profiling of HPV-negative leukoplakia and gingivobuccal complex cancers by Mayuri Inchanalkar, Sumana Srivatsa, Srikant Ambatipudi, Priyanka G. Bhosale, Asawari Patil, Alejandro A. Schäffer, Niko Beerenwinkel, Manoj B. Mahimkar

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Novel gene acquisition on carnivore Y chromosomes. by William J Murphy, A J Pearks Wilkerson, Terje Raudsepp, Richa Agarwala, Alejandro A Schäffer, Roscoe Stanyon, Bhanu P Chowdhary

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Genomic profiling of advanced-stage oral cancers reveals chromosome 11q alterations as markers of poor clinical outcome. by Srikant Ambatipudi, Moritz Gerstung, Ravindra Gowda, Prathamesh Pai, Anita M Borges, Alejandro A Schäffer, Niko Beerenwinkel, Manoj B Mahimkar

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The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective by Saba Ahmadi, Pattara Sukprasert, Rahulsimham Vegesna, Sanju Sinha, Fiorella Schischlik, Natalie Artzi, Samir Khuller, Alejandro A. Schäffer, Eytan Ruppin

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Clinical and Laboratory Features in the Israeli Population with COVID-19 Infection after Pfizer-BioNTech mRNA Booster Vaccination by Ariel Israel, Eugene Merzon, Yotam Shenhar, Ilan Green, Avivit Golan-Cohen, Alejandro A. Schäffer, Eytan Ruppin, Shlomo Vinker, Eli Magen

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The GENDULF algorithm: mining transcriptomics to uncover modifier genes for monogenic diseases by Noam Auslander, Daniel M Ramos, Ivette Zelaya, Hiren Karathia, Thomas O. Crawford, Alejandro A Schäffer, Charlotte J Sumner, Eytan Ruppin

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Large-Scale Study of Antibody Titer Decay following BNT162b2 mRNA Vaccine or SARS-CoV-2 Infection by Ariel Israel, Yotam Shenhar, Ilan Green, Eugene Merzon, Avivit Golan-Cohen, Alejandro A. Schäffer, Eytan Ruppin, Shlomo Vinker, Eli Magen

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Case-control study of vitamin D, dickkopf homolog 1 (DKK1) gene methylation, VDR gene polymorphism and the risk of colon adenoma in African Americans. by Hassan Ashktorab, Bijou Nguza, Mehrnaz Fatemi, Mehdi Nouraie, Duane T Smoot, Alejandro A Schäffer, Sonia S Kupfer, Carlos A Camargo, Hassan Brim

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FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe. by E Michael Gertz, Salim Akhter Chowdhury, Woei-Jyh Lee, Darawalee Wangsa, Kerstin Heselmeyer-Haddad, Thomas Ried, Russell Schwartz, Alejandro A Schäffer

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