Coarse-grained (hybrid) integrative modeling of biomolecular interactions by Jorge Roel-Touris, Alexandre M.J.J. Bonvin

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CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK. by Sjoerd J de Vries, Alexandre M J J Bonvin

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Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification by Katarina Elez, Alexandre M. J. J. Bonvin, Anna Vangone

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Biological vs. Crystallographic Protein Interfaces: An Overview of Computational Approaches for Their Classification by Katarina Elez, Alexandre M. J. J. Bonvin, Anna Vangone

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A unified conformational selection and induced fit approach to protein-peptide docking. by Mikael Trellet, Adrien S J Melquiond, Alexandre M J J Bonvin

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Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit by Gydo C.P.van Zundert, Alexandre M.J.J. Bonvin

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Integrative modeling of membrane-associated protein assemblies by Jorge Roel-Touris, Brian Jiménez-García, Alexandre M. J. J. Bonvin

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ARCTIC-3D: automatic retrieval and clustering of interfaces in complexes from 3D structural information by Marco Giulini, Rodrigo V. Honorato, Jesús L. Rivera, Alexandre M. J. J. Bonvin

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MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing by Rodrigo V. Honorato, Rodrigo V. Honorato, Jorge Roel-Touris, Alexandre M. J. J. Bonvin

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MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein–Protein Docking Conformations by Yong Jung, Cunliang Geng, Alexandre M. J. J. Bonvin, Li C. Xue, Vasant G. Honavar

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iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines by Nicolas Renaud, Yong Jung, Vasant Honavar, Cunliang Geng, Alexandre M.J.J. Bonvin, Li C. Xue

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Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxin-3. by Giuseppe Nicastro, Sokol V Todi, Ezgi Karaca, Alexandre M J J Bonvin, Henry L Paulson, Annalisa Pastore

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pdb-tools: a swiss army knife for molecular structures [version 1; referees: 2 approved] by João P. G. L. M. Rodrigues, João M.C. Teixeira, Mikaël Trellet, Alexandre M. J. J. Bonvin

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Editorial: Multiscale Modeling From Macromolecules to Cell: Opportunities and Challenges of Biomolecular Simulations by Giulia Palermo, Alexandre M. J. J. Bonvin, Matteo Dal Peraro, Rommie E. Amaro, Valentina Tozzini, Valentina Tozzini

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Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network. by Sjoerd J L van Wijk, Adrien S J Melquiond, Sjoerd J de Vries, H Th Marc Timmers, Alexandre M J J Bonvin

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Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem by Rodrigo V. Honorato, Panagiotis I. Koukos, Brian Jiménez-García, Andrei Tsaregorodtsev, Marco Verlato, Andrea Giachetti, Antonio Rosato, Alexandre M. J. J. Bonvin

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A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system by Sjoerd J L van Wijk, Sjoerd J de Vries, Patrick Kemmeren, Anding Huang, Rolf Boelens, Alexandre M J J Bonvin, H Th Marc Timmers

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DeepRank: a deep learning framework for data mining 3D protein-protein interfaces by Nicolas Renaud, Cunliang Geng, Sonja Georgievska, Francesco Ambrosetti, Lars Ridder, Dario F. Marzella, Manon F. Réau, Alexandre M. J. J. Bonvin, Li C. Xue

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Sequence co-evolution gives 3D contacts and structures of protein complexes by Thomas A Hopf, Charlotta P I Schärfe, João P G L M Rodrigues, Anna G Green, Oliver Kohlbacher, Chris Sander, Alexandre M J J Bonvin, Debora S Marks

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SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots by Irina S. Moreira, Panagiotis I. Koukos, Rita Melo, Jose G. Almeida, Antonio J. Preto, Joerg Schaarschmidt, Mikael Trellet, Zeynep H. Gümüş, Joaquim Costa, Alexandre M. J. J. Bonvin

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