Bayesian inference and comparison of stochastic transcription elongation models. by Jordan Douglas, Richard Kingston, Alexei J Drummond

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How accurate and robust are the phylogenetic estimates of Austronesian language relationships? by Simon J Greenhill, Alexei J Drummond, Russell D Gray

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Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration. by Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J Drummond

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Relaxed phylogenetics and dating with confidence. by Alexei J Drummond, Simon Y W Ho, Matthew J Phillips, Andrew Rambaut

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Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. by Jing Yang, Nicola F Müller, Remco Bouckaert, Bing Xu, Alexei J Drummond

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Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. by Philippe Lemey, Sergei L Kosakovsky Pond, Alexei J Drummond, Oliver G Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut

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BEAST 2: a software platform for Bayesian evolutionary analysis. by Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A Suchard, Andrew Rambaut, Alexei J Drummond

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Influenza a virus migration and persistence in North American wild birds. by Justin Bahl, Scott Krauss, Denise Kühnert, Mathieu Fourment, Garnet Raven, S Paul Pryor, Lawrence J Niles, Angela Danner, David Walker, Ian H Mendenhall, Yvonne C F Su, Vivien G Dugan, Rebecca A Halpin, Timothy B Stockwell, Richard J Webby, David E Wentworth, Alexei J Drummond, Gavin J D Smith, Robert G Webster

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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand by Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt

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Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia by Cinthy Jimenez-Silva, Ricardo Rivero, Jordan Douglas, Remco Bouckaert, Ch. Julian Villabona-Arenas, Katherine E. Atkins, Bertha Gastelbondo, Alfonso Calderon, Camilo Guzman, Daniel Echeverri-De la Hoz, Marina Muñoz, Nathalia Ballesteros, Sergio Castañeda, Luz H. Patiño, Angie Ramirez, Nicolas Luna, Alberto Paniz-Mondolfi, Hector Serrano-Coll, Juan David Ramirez, Salim Mattar, Alexei J. Drummond

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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. by Remco Bouckaert, Timothy G Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K Mendes, Nicola F Müller, Huw A Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David Rasmussen, Igor Siveroni, Marc A Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J Drummond

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Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing by Tara Swadi, Jemma L. Geoghegan, Tom Devine, Caroline McElnay, Jillian Sherwood, Phil Shoemack, Xiaoyun Ren, Matt Storey, Sarah Jefferies, Erasmus Smit, James Hadfield, Aoife Kenny, Lauren Jelley, Andrew Sporle, Andrea McNeill, G. Edwin Reynolds, Kip Mouldey, Lindsay Lowe, Gerard Sonder, Alexei J. Drummond, Sue Huang, David Welch, Edward C. Holmes, Nigel French, Colin R. Simpson, Joep de Ligt

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