Evaluation of computational phage detection tools for metagenomic datasets by Kenneth E. Schackart, Jessica B. Graham, Alise J. Ponsero, Alise J. Ponsero, Alise J. Ponsero, Bonnie L. Hurwitz, Bonnie L. Hurwitz

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The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes by Alise J. Ponsero, Bonnie L. Hurwitz, Bonnie L. Hurwitz

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Bacteroides abundance drives birth mode dependent infant gut microbiota developmental trajectories by Dollwin Matharu, Alise J. Ponsero, Alise J. Ponsero, Evgenia Dikareva, Katri Korpela, Kaija-Leena Kolho, Kaija-Leena Kolho, Kaija-Leena Kolho, Willem M. de Vos, Willem M. de Vos, Anne Salonen

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Sources of gut microbiota variation in a large longitudinal Finnish infant cohortResearch in context by Roosa Jokela, Alise J. Ponsero, Evgenia Dikareva, Xiaodong Wei, Kaija-Leena Kolho, Katri Korpela, Willem M. de Vos, Anne Salonen

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Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems by Kai L. Blumberg, Alise J. Ponsero, Matthew Bomhoff, Elisha M. Wood-Charlson, Edward F. DeLong, Bonnie L. Hurwitz, Bonnie L. Hurwitz

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An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny by Evgenia Dikareva, Dollwin Matharu, Emilia Lahtinen, Kaija-Leena Kolho, Kaija-Leena Kolho, Willem M. De Vos, Willem M. De Vos, Anne Salonen, Alise J. Ponsero

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Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity. by George S Watts, James E Thornton, Ken Youens-Clark, Alise J Ponsero, Marvin J Slepian, Emmanuel Menashi, Charles Hu, Wuquan Deng, David G Armstrong, Spenser Reed, Lee D Cranmer, Bonnie L Hurwitz

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