Random sequences rapidly evolve into de novo promoters by Yona, Avihu H., Alm, Eric J., Gore, Jeff, Yona, Avihu, Alm, Eric J

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Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function by Duvallet, Claire, Alm, Eric J.

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A practical guide to methods controlling false discoveries in computational biology by Duvallet, Claire, Alm, Eric J

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Inferring Correlation Networks from Genomic Survey Data by Friedman, Jonathan, Alm, Eric J.

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Tracking Strains in the Microbiome: Insights from Metagenomics and Models by Brito, Ilana Lauren, Alm, Eric J

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Dysbiosis is not an answer by Olesen, Scott Wilder, Alm, Eric J

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Rapid evolutionary innovation during an Archaean genetic expansion by David, Lawrence A., Alm, Eric J.

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Co-evolution and Co-speciation of Host-Gut Bacteria Systems by Groussin, Mathieu, Mazel, Florent, Alm, Eric J

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Co-evolution and Co-speciation of Host-Gut Bacteria Systems by Groussin, Mathieu, Mazel, Florent, Alm, Eric J.

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Efficient Algorithms for the Reconciliation Problem with Gene Duplication, Horizontal Transfer and Loss by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis

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Structure, function and diversity of the healthy human microbiome by Alm, Eric J., Friedman, Jonathan, Smillie, Christopher S.

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Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis

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dbOTU3: A new implementation of distribution-based OTU calling by Olesen, Scott Wilder, Duvallet, Claire, Alm, Eric J

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Correcting for batch effects in case-control microbiome studies by Gibbons, Sean Michael, Duvallet, Claire, Alm, Eric J

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Using fecal microbiota as biomarkers for predictions of performance in the selective breeding process of pedigree broiler breeders by Perrotta, Allison R., Rockafellow, Isaac, Alm, Eric J.

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Interactions in self-assembled microbial communities saturate with diversity by Yu, Xiaoqian, Polz, Martin F, Alm, Eric J

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Fast and accurate variant identification tool for sequencing-based studies by Gaston, Jeffry M., Alm, Eric J., Zhang, An-Ni

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A framework for human microbiome research by Friedman, Jonathan, Smillie, Chris Scott, Alm, Eric J.

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Designing fecal microbiota transplant trials that account for differences in donor stool efficacy by Olesen, Scott Wilder, Gurry, Thomas Jerome, Alm, Eric J

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Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family by Camas, Francisco M., Alm, Eric J., Poyatos, Juan F.

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