Biological sequences as pictures – a generic two dimensional solution for iterated maps by Vinga Susana, Almeida Jonas S

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Computing distribution of scale independent motifs in biological sequences by Vinga Susana, Almeida Jonas S

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Universal sequence map (USM) of arbitrary discrete sequences by Almeida Jonas S, Vinga Susana

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Efficient Boolean implementation of universal sequence maps (bUSM) by Almeida Jonas S, Schwacke John

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Local Renyi entropic profiles of DNA sequences by Vinga Susana, Almeida Jonas S

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mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code by Almeida Jonas S, Karpievitch Yuliya V

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S3DB core: a framework for RDF generation and management in bioinformatics infrastructures by Deus Helena F, Almeida Jonas S, Maass Wolfgang

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Entropic Profiler – detection of conservation in genomes using information theory by Almeida Jonas S, Freitas Ana T, Fernandes Francisco, Vinga Susana

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Fractal MapReduce decomposition of sequence alignment by Almeida Jonas S, Grüneberg Alexander, Maass Wolfgang, Vinga Susana

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An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results by Arthur John, Swartz Martha, Jiang Liu, Stanislaus Romesh, Almeida Jonas S

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Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement by Carriço João A, Pinto Francisco R, Ramirez Mário, Almeida Jonas S

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Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis by Vinga Susana, Carvalho Alexandra M, Francisco Alexandre P, Russo Luís MS, Almeida Jonas S

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An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis by Moerschell Rick, Rajagopalan Balaji, Arthur John M, Stanislaus Romesh, McGlothlen Brian, Almeida Jonas S

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Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP by Almeida Jonas S, de Brouwer Jody FC, Mueller Lukas N, Stal Lucas J, Xavier João B

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Parameter selection for and implementation of a web-based decision-support tool to predict extubation outcome in premature infants by Hulsey Thomas C, Knapp Rebecca G, Annibale David J, Wagner Carol L, Mueller Martina, Almeida Jonas S

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AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services by Hayashi Yuki, Vasconcelos Ana T, Deus Helena F, Correa Miria C, Ajani Jaffer A, Patnana Srikrishna V, Almeida Jonas S

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S3QL: A distributed domain specific language for controlled semantic integration of life sciences data by de Lencastre Hermínia, Maass Wolfgang, Stanislaus Romesh, Miragaia Maria, Correa Miriã C, Deus Helena F, Fox Ronan, Almeida Jonas S

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Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information by Chapman Robert, Jenny Matthew J, Wu Shuyuan, Mckillen David J, Chen Yian A, Gross Paul S, Warr Gregory W, Almeida Jonas S

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A multivariate prediction model for microarray cross-hybridization by Xu Wenying, Peck Konan, Slate Elizabeth H, Lu Xinghua, Chou Cheng-Chung, Chen Yian A, Voit Eberhard O, Almeida Jonas S

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Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions by Neely Benjamin A, Soper Jennifer L, Greig Denise J, Carlin Kevin P, Favre Elizabeth G, Gulland Frances MD, Almeida Jonas S, Janech Michael G

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