CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data. by Asa Thibodeau, Shubham Khetan, Alper Eroglu, Ryan Tewhey, Michael L Stitzel, Duygu Ucar

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NIPMAP: niche-phenotype mapping of multiplex histology data by community ecology by Anissa El Marrahi, Fabio Lipreri, Ziqi Kang, Louise Gsell, Alper Eroglu, David Alber, Jean Hausser

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Sexual-dimorphism in human immune system aging by Eladio J. Márquez, Cheng-han Chung, Radu Marches, Robert J. Rossi, Djamel Nehar-Belaid, Alper Eroglu, David J. Mellert, George A. Kuchel, Jacques Banchereau, Duygu Ucar

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AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data by Asa Thibodeau, Alper Eroglu, Christopher S. McGinnis, Nathan Lawlor, Djamel Nehar-Belaid, Romy Kursawe, Radu Marches, Daniel N. Conrad, George A. Kuchel, Zev J. Gartner, Jacques Banchereau, Michael L. Stitzel, A. Ercument Cicek, Duygu Ucar

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