Quantifying and Understanding Well-to-Well Contamination in Microbiome Research by Jeremiah J. Minich, Jon G. Sanders, Amnon Amir, Greg Humphrey, Jack A. Gilbert, Rob Knight

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Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal by Haya Abbas-Egbariya, Yael Haberman, Tzipi Braun, Rotem Hadar, Lee Denson, Ohad Gal-Mor, Amnon Amir

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Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies by Se Jin Song, Amnon Amir, Jessica L. Metcalf, Katherine R. Amato, Zhenjiang Zech Xu, Greg Humphrey, Rob Knight

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Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping by Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Justine Debelius, James T. Morton, Embriette Hyde, Adam Robbins-Pianka, Rob Knight

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Lack of gut microbiome recovery with spinal cord injury rehabilitation by Ayelet Gur Arie, Itamar Toren, Rotem Hadar, Tzipi Braun, Gilat Efroni, Efrat Glick Saar, Zecharia Madar, Amnon Amir, Gabriel Zeilig, Yael Haberman

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Calour: an Interactive, Microbe-Centric Analysis Tool by Zhenjiang Zech Xu, Amnon Amir, Jon Sanders, Qiyun Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight

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Gut microbiome development in early childhood is affected by day care attendance by Amnon Amir, Ortal Erez-Granat, Tzipi Braun, Katya Sosnovski, Rotem Hadar, Marina BenShoshan, Sophia Heiman, Haya Abbas-Egbariya, Efrat Glick Saar, Gilat Efroni, Yael Haberman

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Reduced LHFPL3-AS2 lncRNA expression is linked to altered epithelial polarity and proliferation, and to ileal ulceration in Crohn disease by Katya E. Sosnovski, Tzipi Braun, Amnon Amir, Marina BenShoshan, Haya Abbas-Egbariya, Rakefet Ben-Yishay, Liat Anafi, Camilla Avivi, Iris Barshack, Lee A. Denson, Yael Haberman

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Gut microbial signature in lung cancer patients highlights specific taxa as predictors for durable clinical benefit by Yael Haberman, Iris Kamer, Amnon Amir, Sapir Goldenberg, Gilat Efroni, Inbal Daniel-Meshulam, Anastasiya Lobachov, Sameh Daher, Rotem Hadar, Hadas Gantz-Sorotsky, Damien Urban, Tzipi Braun, Jair Bar

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Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns by Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Evguenia Kopylova, James T. Morton, Zhenjiang Zech Xu, Eric P. Kightley, Luke R. Thompson, Embriette R. Hyde, Antonio Gonzalez, Rob Knight

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Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations. by Doratha A Byrd, Jun Chen, Emily Vogtmann, Autumn Hullings, Se Jin Song, Amnon Amir, Muhammad G Kibriya, Habibul Ahsan, Yu Chen, Heidi Nelson, Rob Knight, Jianxin Shi, Nicholas Chia, Rashmi Sinha

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KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples by Jeremiah J. Minich, Qiyun Zhu, Stefan Janssen, Ryan Hendrickson, Amnon Amir, Russ Vetter, John Hyde, Megan M. Doty, Kristina Stillwell, James Benardini, Jae H. Kim, Eric E. Allen, Kasthuri Venkateswaran, Rob Knight

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Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae by Tal Luzzatto-Knaan, Neha Garg, Mingxun Wang, Evgenia Glukhov, Yao Peng, Gail Ackermann, Amnon Amir, Brendan M Duggan, Sergey Ryazanov, Lena Gerwick, Rob Knight, Theodore Alexandrov, Nuno Bandeira, William H Gerwick, Pieter C Dorrestein

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The impact of skin care products on skin chemistry and microbiome dynamics by Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V. Melnik, Livia S. Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C. Dorrestein

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Mucosal transcriptomics highlight lncRNAs implicated in ulcerative colitis, Crohn’s disease, and celiac disease by Tzipi Braun, Katya E. Sosnovski, Amnon Amir, Marina BenShoshan, Kelli L. VanDussen, Rebekah Karns, Nina Levhar, Haya Abbas-Egbariya, Rotem Hadar, Gilat Efroni, David Castel, Camila Avivi, Michael J. Rosen, Anne M. Grifiths, Thomas D. Walters, David R. Mack, Brendan M. Boyle, Syed Asad Ali, Sean R. Moore, Melanie Schirmer, Ramnik J. Xavier, Subra Kugathasan, Anil G. Jegga, Batya Weiss, Chen Mayer, Iris Barshack, Shomron Ben-Horin, Igor Ulitsky, Anthony Beucher, Jorge Ferrer, Jeffrey S. Hyams, Lee A. Denson, Yael Haberman

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