Probing the extent of randomness in protein interaction networks. by Joseph Ivanic, Anders Wallqvist, Jaques Reifman

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Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification. by Daniel R Ripoll, Sidhartha Chaudhury, Anders Wallqvist

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PSPP: a protein structure prediction pipeline for computing clusters. by Michael S Lee, Rajkumar Bondugula, Valmik Desai, Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman

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A stochastic B cell affinity maturation model to characterize mechanisms of protection for tetravalent dengue vaccine constructs by Venkat R. Pannala, Venkat R. Pannala, Hung D. Nguyen, Hung D. Nguyen, Anders Wallqvist

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AI algorithm for personalized resource allocation and treatment of hemorrhage casualties by Xin Jin, Xin Jin, Andrew Frock, Andrew Frock, Sridevi Nagaraja, Sridevi Nagaraja, Anders Wallqvist, Jaques Reifman

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Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding by Daniel R. Ripoll, Daniel A. J. Mitchell, Lesley C. Dupuy, Anders Wallqvist, Connie Schmaljohn, Sidhartha Chaudhury

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Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase. by Daniel R Ripoll, Ilja V Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A Kuschner, Anders Wallqvist, Jaques Reifman

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Metabolic responses in blood-stage malaria parasites associated with increased and decreased sensitivity to PfATP4 inhibitors by Shivendra G. Tewari, Rubayet Elahi, Bobby Kwan, Krithika Rajaram, Suyash Bhatnagar, Jaques Reifman, Sean T. Prigge, Akhil B. Vaidya, Anders Wallqvist

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Characterization of chemically induced liver injuries using gene co-expression modules. by Gregory J Tawa, Mohamed Diwan M AbdulHameed, Xueping Yu, Kamal Kumar, Danielle L Ippolito, John A Lewis, Jonathan D Stallings, Anders Wallqvist

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Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice by Daniel A. J. Mitchell, Lesley C. Dupuy, Mariano Sanchez-Lockhart, Gustavo Palacios, Jaap W. Back, Katya Shimanovskaya, Sidhartha Chaudhury, Daniel R. Ripoll, Anders Wallqvist, Connie S. Schmaljohn

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Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism. by Bonnie V Dougherty, Connor J Moore, Kristopher D Rawls, Matthew L Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J Saucerman, Glynis L Kolling, Anders Wallqvist, Jason A Papin

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Rapid screening of chemicals for their potential to cause specific toxidromes by Ruifeng Liu, Ruifeng Liu, Mohamed Diwan M. AbdulHameed, Mohamed Diwan M. AbdulHameed, Zhen Xu, Zhen Xu, Benjamin Clancy, Benjamin Clancy, Valmik Desai, Valmik Desai, Anders Wallqvist

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MONSTROUS: a web-based chemical-transporter interaction profiler by Mohamed Diwan M. AbdulHameed, Mohamed Diwan M. AbdulHameed, Souvik Dey, Souvik Dey, Zhen Xu, Zhen Xu, Ben Clancy, Ben Clancy, Valmik Desai, Valmik Desai, Anders Wallqvist

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Exposure to PFAS chemicals induces sex-dependent alterations in key rate-limiting steps of lipid metabolism in liver steatosis by Archana Hari, Archana Hari, Mohamed Diwan M. AbdulHameed, Mohamed Diwan M. AbdulHameed, Michele R. Balik-Meisner, Deepak Mav, Dhiral P. Phadke, Elizabeth H. Scholl, Ruchir R. Shah, Warren Casey, Scott S. Auerbach, Anders Wallqvist, Venkat R. Pannala, Venkat R. Pannala

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