Genomics and privacy: implications of the new reality of closed data for the field. by Dov Greenbaum, Andrea Sboner, Xinmeng Jasmine Mu, Mark Gerstein

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The role of disorder in interaction networks: a structural analysis by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein

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IQSeq: integrated isoform quantification analysis based on next-generation sequencing. by Jiang Du, Jing Leng, Lukas Habegger, Andrea Sboner, Drew McDermott, Mark Gerstein

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Identification of a therapeutic target using molecular sequencing for treatment of recurrent uterine serous adenocarcinoma by Kelsey Musselman, Shannon Glynn, Juan Miguel Mosquera, Olivier Elemento, Andrea Sboner, Himisha Beltran, Kevin Holcomb

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Are we there yet? A machine learning architecture to predict organotropic metastases by Michael Skaro, Marcus Hill, Yi Zhou, Shannon Quinn, Melissa B. Davis, Andrea Sboner, Mandi Murph, Jonathan Arnold

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Loss of an Androgen-Inactivating and Isoform-Specific HSD17B4 Splice Form Enables Emergence of Castration-Resistant Prostate Cancer by Hyun-Kyung Ko, Michael Berk, Yoon-Mi Chung, Belinda Willard, Rohan Bareja, Mark Rubin, Andrea Sboner, Nima Sharifi

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Identification of Molecular Tumor Markers in Renal Cell Carcinomas with TFE3 Protein Expression by RNA Sequencing by Dorothee Pflueger, Andrea Sboner, Martina Storz, Jasmine Roth, Eva Compérat, Elisabeth Bruder, Mark A. Rubin, Peter Schraml, Holger Moch

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569 Investigating the Role of FOXA2 During the Transition to Neuroendocrine Prostate Cancer by Richard Garner, Nicholas Brady, Kate Dunmore, Richa Singh, Alyssa Bagadion, Andrea Sboner, Olivier Elemento, Brian Robinson, Himisha Beltran, David S. Rickman

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Epigenomic Alterations in Localized and Advanced Prostate Cancer by Pei-Chun Lin, Eugenia G. Giannopoulou, Kyung Park, Juan Miguel Mosquera, Andrea Sboner, Ashutosh K. Tewari, Levi A. Garraway, Himisha Beltran, Mark A. Rubin, Olivier Elemento

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Erratum to: Unraveling the clonal hierarchy of somatic genomic aberrations by Davide Prandi, Sylvan C. Baca, Alessandro Romanel, Christopher E. Barbieri, Juan-Miguel Mosquera, Jacqueline Fontugne, Himisha Beltran, Andrea Sboner, Levi A. Garraway, Mark A. Rubin, Francesca Demichelis

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Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network by Priyanka Dhingra, Alexander Martinez-Fundichely, Adeline Berger, Franklin W. Huang, Andre Neil Forbes, Eric Minwei Liu, Deli Liu, Andrea Sboner, Pablo Tamayo, David S. Rickman, Mark A. Rubin, Ekta Khurana

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Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. by Tara A Gianoulis, Meghan A Griffin, Daniel J Spakowicz, Brian F Dunican, Cambria J Alpha, Andrea Sboner, A Michael Sismour, Chinnappa Kodira, Michael Egholm, George M Church, Mark B Gerstein, Scott A Strobel

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G3BP1 inhibits Cul3SPOP to amplify AR signaling and promote prostate cancer by Chandrani Mukhopadhyay, Chenyi Yang, Limei Xu, Deli Liu, Yu Wang, Dennis Huang, Lesa Dayal Deonarine, Joanna Cyrta, Elai Davicioni, Andrea Sboner, Brian. D. Robinson, Arul M. Chinnaiyan, Mark A. Rubin, Christopher E. Barbieri, Pengbo Zhou

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Functional comparison of exome capture-based methods for transcriptomic profiling of formalin-fixed paraffin-embedded tumors by Kyrillus S. Shohdy, Rohan Bareja, Michael Sigouros, David C. Wilkes, Princesca Dorsaint, Jyothi Manohar, Daniel Bockelman, Jenny Z. Xiang, Rob Kim, Kentaro Ohara, Kenneth Eng, Juan Miguel Mosquera, Olivier Elemento, Andrea Sboner, Alicia Alonso, Bishoy M. Faltas

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Androgen receptor variant shows heterogeneous expression in prostate cancer according to differentiation stage by Ada Gjyrezi, Giuseppe Galletti, Jiaren Zhang, Daniel Worroll, Michael Sigouros, Seaho Kim, Victoria Cooley, Karla V. Ballman, Allyson J. Ocean, Manish A. Shah, Joseph M. Scandura, Andrea Sboner, David M. Nanus, Himisha Beltran, Scott Tagawa, Paraskevi Giannakakou

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Inherited determinants of early recurrent somatic mutations in prostate cancer by Alessandro Romanel, Sonia Garritano, Blerta Stringa, Mirjam Blattner, Davide Dalfovo, Dimple Chakravarty, David Soong, Kellie A. Cotter, Gianluca Petris, Priyanka Dhingra, Paola Gasperini, Anna Cereseto, Olivier Elemento, Andrea Sboner, Ekta Khurana, Alberto Inga, Mark A. Rubin, Francesca Demichelis

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Diversity in Androgen Receptor Action Among Treatment-naïve Prostate Cancers Is Reflected in Treatment Response Predictions and Molecular Subtypes by Salma Ben-Salem, Qiang Hu, Yang Liu, Mohammed Alshalalfa, Xin Zhao, Irene Wang, Varadha Balaji Venkadakrishnan, Dhirodatta Senapati, Sangeeta Kumari, Deli Liu, Andrea Sboner, Christopher E. Barbieri, Felix Feng, Jean-Noel Billaud, Elai Davicioni, Song Liu, Hannelore V. Heemers

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Evolution of structural rearrangements in prostate cancer intracranial metastases by Francesca Khani, William F. Hooper, Xiaofei Wang, Timothy R. Chu, Minita Shah, Lara Winterkorn, Michael Sigouros, Vincenza Conteduca, David Pisapia, Sara Wobker, Sydney Walker, Julie N. Graff, Brian Robinson, Juan Miguel Mosquera, Andrea Sboner, Olivier Elemento, Nicolas Robine, Himisha Beltran

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Author Correction: Evolution of structural rearrangements in prostate cancer intracranial metastases by Francesca Khani, William F. Hooper, Xiaofei Wang, Timothy R. Chu, Minita Shah, Lara Winterkorn, Michael Sigouros, Vincenza Conteduca, David Pisapia, Sara Wobker, Sydney Walker, Julie N. Graff, Brian Robinson, Juan Miguel Mosquera, Andrea Sboner, Olivier Elemento, Nicolas Robine, Himisha Beltran

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N-myc Downstream Regulated Gene 1 (NDRG1) Is Fused to ERG in Prostate Cancer by Dorothee Pflueger, David S. Rickman, Andrea Sboner, Sven Perner, Christopher J. LaFargue, Maria A. Svensson, Benjamin J. Moss, Naoki Kitabayashi, Yihang Pan, Alexandre de la Taille, Rainer Kuefer, Ashutosh K. Tewari, Francesca Demichelis, Mark S. Chee, Mark B. Gerstein, Mark A. Rubin

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