Towards an Integrative Understanding of Diet–Host–Gut Microbiome Interactions by Mark N. Read, Andrew J. Holmes

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Community dynamics in the mouse gut microbiota: a possible role for IRF9-regulated genes in community homeostasis. by Claire L Thompson, Markus J Hofer, Iain L Campbell, Andrew J Holmes

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091 The impact of device-assisted therapy initiation on the gut microbiome in Parkinson’s disease by Michal Lubomski, Ryan L Davis, Jean Yang, Carolyn M Sue, Xiangnan Xu, Andrew J Holmes

The Gut Microbiome in Parkinson’s Disease: A Longitudinal Study of the Impacts on Disease Progression and the Use of Device-Assisted Therapies by Michal Lubomski, Michal Lubomski, Michal Lubomski, Xiangnan Xu, Xiangnan Xu, Andrew J. Holmes, Andrew J. Holmes, Samuel Muller, Samuel Muller, Jean Y. H. Yang, Jean Y. H. Yang, Ryan L. Davis, Carolyn M. Sue, Carolyn M. Sue

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Nutritional Intake and Gut Microbiome Composition Predict Parkinson’s Disease by Michal Lubomski, Michal Lubomski, Michal Lubomski, Xiangnan Xu, Xiangnan Xu, Andrew J. Holmes, Andrew J. Holmes, Samuel Muller, Samuel Muller, Jean Y. H. Yang, Jean Y. H. Yang, Ryan L. Davis, Carolyn M. Sue, Carolyn M. Sue

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037 The gut microbiome in Parkinson’s disease: longitudinal insights into disease progression and the use of device-assisted therapies by Michal Lubomski, Ryan L Davis, Jean Yang, Carolyn M Sue, Xiangnan Xu, Andrew J Holmes, Samuel Mueller

015 Gut microbiota and nutritional profiles of Parkinson’s disease patients by Michal Lubomski, Ryan L Davis, Jean Yang, Carolyn M Sue, Xiangnan Xu, Andrew J Holmes, Samuel Mueller

Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models by Juan P. Molina Ortiz, Dale D. McClure, Erin R. Shanahan, Fariba Dehghani, Andrew J. Holmes, Mark N. Read

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NEMoE: a nutrition aware regularized mixture of experts model to identify heterogeneous diet-microbiome-host health interactions by Xiangnan Xu, Michal Lubomski, Andrew J. Holmes, Carolyn M. Sue, Ryan L. Davis, Samuel Muller, Jean Y. H. Yang

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My Diet Study: protocol for a two-part observational, longitudinal, psycho-biological study of dieting in Australian youth by Mirei Okada, Mirei Okada, Melissa J. Pehlivan, Melissa J. Pehlivan, Jane Miskovic-Wheatley, Jane Miskovic-Wheatley, Sarah Barakat, Sarah Barakat, Kristi R. Griffiths, Kristi R. Griffiths, Stephen W. Touyz, Stephen W. Touyz, Stephen J. Simpson, Stephen J. Simpson, Sarah Maguire, Sarah Maguire, Andrew J. Holmes, Andrew J. Holmes

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Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic by Atiqul Islam, Maurizio Labbate, Steven P. Djordjevic, Munirul Alam, Aaron Darling, Jacqueline Melvold, Andrew J. Holmes, Fatema T. Johura, Alejandro Cravioto, Ian G. Charles, H. W. Stokes

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Increased gut permeability and microbiota change associate with mesenteric fat inflammation and metabolic dysfunction in diet-induced obese mice. by Yan Y Lam, Connie W Y Ha, Craig R Campbell, Andrew J Mitchell, Anuwat Dinudom, Jan Oscarsson, David I Cook, Nicholas H Hunt, Ian D Caterson, Andrew J Holmes, Len H Storlien

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Inhibition of the endosymbiont “Candidatus Midichloria mitochondrii” during 16S rRNA gene profiling reveals potential pathogens in Ixodes ticks from Australia by Alexander W. Gofton, Charlotte L. Oskam, Nathan Lo, Tiziana Beninati, Heng Wei, Victoria McCarl, Dáithí C. Murray, Andrea Paparini, Telleasha L. Greay, Andrew J. Holmes, Michael Bunce, Una Ryan, Peter Irwin

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