huva: A human variation analysis framework to predict gene perturbation from population-scale multi-omics data by Anna C. Aschenbrenner, Lorenzo Bonaguro

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Neutrophils in COVID-19 by Nico Reusch, Nico Reusch, Elena De Domenico, Elena De Domenico, Lorenzo Bonaguro, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Jonas Schulte-Schrepping, Kevin Baßler, Kevin Baßler, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner

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Dysregulated Functions of Lung Macrophage Populations in COPD by Theodore S. Kapellos, Kevin Bassler, Anna C. Aschenbrenner, Wataru Fujii, Joachim L. Schultze

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Alveolar macrophage transcriptomic profiling in COPD shows major lipid metabolism changes by Wataru Fujii, Theodore S. Kapellos, Kevin Baßler, Kristian Händler, Lisa Holsten, Rainer Knoll, Stefanie Warnat-Herresthal, Marie Oestreich, Emily R. Hinkley, Jan Hasenauer, Carmen Pizarro, Christoph Thiele, Anna C. Aschenbrenner, Thomas Ulas, Dirk Skowasch, Joachim L. Schultze

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Decoding mechanism of action and sensitivity to drug candidates from integrated transcriptome and chromatin state by Caterina Carraro, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Arik Horne, Marie Oestreich, Stefanie Warnat-Herresthal, Tim Helbing, Michele De Franco, Kristian Haendler, Sach Mukherjee, Thomas Ulas, Valentina Gandin, Richard Goettlich, Anna C Aschenbrenner, Joachim L Schultze, Barbara Gatto

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Unveiling the power of high-dimensional cytometry data with cyCONDOR by Charlotte Kröger, Sophie Müller, Jacqueline Leidner, Theresa Kröber, Stefanie Warnat-Herresthal, Jannis Bastian Spintge, Timo Zajac, Anna Neubauer, Aleksej Frolov, Caterina Carraro, DELCODE Study Group, Frank Jessen, Simone Puccio, Anna C. Aschenbrenner, Joachim L. Schultze, Tal Pecht, Marc D. Beyer, Lorenzo Bonaguro

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Induction of Rosette-to-Lumen stage embryoids using reprogramming paradigms in ESCs by Jan Langkabel, Arik Horne, Lorenzo Bonaguro, Lisa Holsten, Tatiana Hesse, Alexej Knaus, Yannick Riedel, Matthias Becker, Kristian Händler, Tarek Elmzzahi, Kevin Bassler, Nico Reusch, Leon Harootoonovtch Yeghiazarian, Tal Pecht, Adem Saglam, Thomas Ulas, Anna C. Aschenbrenner, Franziska Kaiser, Caroline Kubaczka, Joachim L. Schultze, Hubert Schorle

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Molecular mechanisms and treatment responses of pulmonary fibrosis in severe COVID-19 by Emma J. Kooistra, Kilian Dahm, Antonius E. van Herwaarden, Jelle Gerretsen, Melanie Nuesch Germano, Karoline Mauer, Ruben L. Smeets, Sjef van der Velde, Maarten J. W. van den Berg, Johannes G. van der Hoeven, Anna C. Aschenbrenner, Joachim L. Schultze, Thomas Ulas, Matthijs Kox, Peter Pickkers

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Human variation in population-wide gene expression data predicts gene perturbation phenotype by Lorenzo Bonaguro, Jonas Schulte-Schrepping, Caterina Carraro, Laura L. Sun, Benedikt Reiz, Ioanna Gemünd, Adem Saglam, Souad Rahmouni, Michel Georges, Peer Arts, Alexander Hoischen, Leo A.B. Joosten, Frank L. van de Veerdonk, Mihai G. Netea, Kristian Händler, Sach Mukherjee, Thomas Ulas, Joachim L. Schultze, Anna C. Aschenbrenner

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Chromatin accessibility profiling of targeted cell populations with laser capture microdissection coupled to ATAC-seq by Caterina Carraro, Lorenzo Bonaguro, Rachana Srinivasa, Martina van Uelft, Victoria Isakzai, Jonas Schulte-Schrepping, Prerna Gambhir, Tarek Elmzzahi, Jessica V. Montgomery, Hannah Hayer, Yuanfang Li, Heidi Theis, Michael Kraut, Krishnaa T. Mahbubani, Anna C. Aschenbrenner, Ireen König, Eugenio Fava, Hans-Ulrich Fried, Elena De Domenico, Marc Beyer, Adem Saglam, Joachim L. Schultze

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Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation by Kevin Baßler, Wataru Fujii, Theodore S. Kapellos, Erika Dudkin, Nico Reusch, Ari Horne, Benedikt Reiz, Malte D. Luecken, Collins Osei-Sarpong, Stefanie Warnat-Herresthal, Lorenzo Bonaguro, Lorenzo Bonaguro, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Allon Wagner, Allon Wagner, Patrick Günther, Carmen Pizarro, Tina Schreiber, Rainer Knoll, Rainer Knoll, Rainer Knoll, Lisa Holsten, Charlotte Kröger, Charlotte Kröger, Elena De Domenico, Elena De Domenico, Matthias Becker, Matthias Becker, Kristian Händler, Kristian Händler, Christian T. Wohnhaas, Florian Baumgartner, Meike Köhler, Heidi Theis, Heidi Theis, Michael Kraut, Michael Kraut, Marc H. Wadsworth, Marc H. Wadsworth, Travis K. Hughes, Humberto J. Ferreira, Emily Hinkley, Emily Hinkley, Ines H. Kaltheuner, Matthias Geyer, Christoph Thiele, Alex K. Shalek, Alex K. Shalek, Andreas Feißt, Daniel Thomas, Henning Dickten, Marc Beyer, Marc Beyer, Marc Beyer, Patrick Baum, Nir Yosef, Nir Yosef, Nir Yosef, Nir Yosef, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Thomas Ulas, Thomas Ulas, Thomas Ulas, Jan Hasenauer, Jan Hasenauer, Fabian J. Theis, Fabian J. Theis, Dirk Skowasch, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze

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NCX1 represents an ionic Na+ sensing mechanism in macrophages. by Patrick Neubert, Arne Homann, David Wendelborn, Anna-Lorena Bär, Luka Krampert, Maximilian Trum, Agnes Schröder, Stefan Ebner, Andrea Weichselbaum, Valentin Schatz, Peter Linz, Roland Veelken, Jonas Schulte-Schrepping, Anna C Aschenbrenner, Thomas Quast, Christian Kurts, Sabrina Geisberger, Karl Kunzelmann, Karin Hammer, Katrina J Binger, Jens Titze, Dominik N Müller, Waldemar Kolanus, Joachim L Schultze, Stefan Wagner, Jonathan Jantsch

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The 2000HIV study: Design, multi-omics methods and participant characteristics by Wilhelm A. J. W. Vos, Wilhelm A. J. W. Vos, Albert L. Groenendijk, Albert L. Groenendijk, Marc J. T. Blaauw, Marc J. T. Blaauw, Louise E. van Eekeren, Adriana Navas, Maartje C. P. Cleophas, Nadira Vadaq, Vasiliki Matzaraki, Jéssica C. dos Santos, Elise M. G. Meeder, Elise M. G. Meeder, Elise M. G. Meeder, Janeri Fröberg, Gert Weijers, Yue Zhang, Jingyuan Fu, Rob ter Horst, Christoph Bock, Christoph Bock, Rainer Knoll, Rainer Knoll, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Joachim Schultze, Joachim Schultze, Joachim Schultze, Linos Vanderkerckhove, Talent Hwandih, Elizabeth R. Wonderlich, Sai V. Vemula, Mike van der Kolk, Sterre C. P. de Vet, Willem L. Blok, Kees Brinkman, Casper Rokx, Arnt F. A. Schellekens, Arnt F. A. Schellekens, Arnt F. A. Schellekens, Quirijn de Mast, Leo A. B. Joosten, Leo A. B. Joosten, Marvin A. H. Berrevoets, Janneke E. Stalenhoef, Annelies Verbon, Jan van Lunzen, Mihai G. Netea, Mihai G. Netea, Andre J. A. M. van der Ven

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Fighting Post-COVID and ME/CFS – development of curative therapies by Carmen Scheibenbogen, Judith Theresia Bellmann-Strobl, Judith Theresia Bellmann-Strobl, Judith Theresia Bellmann-Strobl, Cornelia Heindrich, Kirsten Wittke, Elisa Stein, Christiana Franke, Harald Prüss, Harald Prüss, Hannah Preßler, Marie-Luise Machule, Heinrich Audebert, Carsten Finke, Hanna Gwendolyn Zimmermann, Hanna Gwendolyn Zimmermann, Hanna Gwendolyn Zimmermann, Birgit Sawitzki, Birgit Sawitzki, Christian Meisel, Christian Meisel, Markus Toelle, Anne Krueger, Anna C. Aschenbrenner, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze, Marc D. Beyer, Marc D. Beyer, Markus Ralser, Markus Ralser, Michael Mülleder, Leif Erik Sander, Frank Konietschke, Friedemann Paul, Friedemann Paul, Friedemann Paul, Silvia Stojanov, Lisa Bruckert, Dennis M. Hedderich, Franziska Knolle, Gabriela Riemekasten, Maria J. G. T. Vehreschild, Oliver A. Cornely, Oliver A. Cornely, Oliver A. Cornely, Uta Behrends, Uta Behrends, Uta Behrends, Susen Burock

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Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients by Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos, Melanie Nuesch-Germano, Konstantina Gkizeli, Lorenzo Bonaguro, Nico Reusch, Kevin Baßler, Maria Saridaki, Rainer Knoll, Tal Pecht, Theodore S. Kapellos, Sarandia Doulou, Charlotte Kröger, Miriam Herbert, Lisa Holsten, Arik Horne, Ioanna D. Gemünd, Nikoletta Rovina, Shobhit Agrawal, Kilian Dahm, Martina van Uelft, Anna Drews, Lena Lenkeit, Niklas Bruse, Jelle Gerretsen, Jannik Gierlich, Matthias Becker, Kristian Händler, Michael Kraut, Heidi Theis, Simachew Mengiste, Elena De Domenico, Jonas Schulte-Schrepping, Lea Seep, Jan Raabe, Christoph Hoffmeister, Michael ToVinh, Verena Keitel, Gereon Rieke, Valentina Talevi, Dirk Skowasch, N. Ahmad Aziz, Peter Pickkers, Frank L. van de Veerdonk, Mihai G. Netea, Joachim L. Schultze, Matthijs Kox, Monique M. B. Breteler, Jacob Nattermann, Antonia Koutsoukou, Evangelos J. Giamarellos-Bourboulis, Thomas Ulas, German COVID-19 Omics Initiative (DeCOI)

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Identification of drug candidates targeting monocyte reprogramming in people living with HIV by Rainer Knoll, Rainer Knoll, Lorenzo Bonaguro, Lorenzo Bonaguro, Jéssica C. dos Santos, Jéssica C. dos Santos, Stefanie Warnat-Herresthal, Stefanie Warnat-Herresthal, Maartje C. P. Jacobs-Cleophas, Maartje C. P. Jacobs-Cleophas, Edda Blümel, Nico Reusch, Arik Horne, Arik Horne, Miriam Herbert, Miriam Herbert, Melanie Nuesch-Germano, Twan Otten, Twan Otten, Wouter A. van der Heijden, Wouter A. van der Heijden, Lisa van de Wijer, Lisa van de Wijer, Alex K. Shalek, Alex K. Shalek, Alex K. Shalek, Kristian Händler, Kristian Händler, Matthias Becker, Marc D. Beyer, Marc D. Beyer, Mihai G. Netea, Mihai G. Netea, Mihai G. Netea, Leo A. B. Joosten, Leo A. B. Joosten, Leo A. B. Joosten, Andre J. A. M. van der Ven, Andre J. A. M. van der Ven, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze, Anna C. Aschenbrenner

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