Anne E. Carpenter

Self-portrait photograph Anne E. Carpenter is an American scientist in the field of image analysis for cell biology and artificial intelligence for drug discovery. She is the co-creator of CellProfiler, open-source software for high-throughput biological image analysis, and a co-inventor of the Cell Painting assay, a method for image-based profiling. She is an Institute Scientist and Senior Director of the Imaging Platform at the Broad Institute. Provided by Wikipedia
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  1. 1
    Bridging Domain and Data

    Bridging Domain and Data by Anne E. Carpenter

    Published 2020-07-01
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  2. 2
    Why I shrank my lab by half

    Why I shrank my lab by half by Anne E Carpenter

    Published 2022-09-01
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  3. 3
    Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.

    Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening. by Vebjorn Ljosa, Anne E Carpenter

    Published 2009-12-01
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  4. 4
    CellProfiler™: free, versatile software for automated biological image analysis

    CellProfiler™: free, versatile software for automated biological image analysis by Michael R. Lamprecht, David M. Sabatini, Anne E. Carpenter

    Published 2007-01-01
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  5. 5
    Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.

    Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. by Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh

    Published 2024-11-01
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  6. 6
    Evaluating batch correction methods for image-based cell profiling

    Evaluating batch correction methods for image-based cell profiling by John Arevalo, Ellen Su, Jessica D. Ewald, Robert van Dijk, Anne E. Carpenter, Shantanu Singh

    Published 2024-08-01
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  7. 7
    Systematic morphological profiling of human gene and allele function via Cell Painting

    Systematic morphological profiling of human gene and allele function via Cell Painting by Mohammad Hossein Rohban, Shantanu Singh, Xiaoyun Wu, Julia B Berthet, Mark-Anthony Bray, Yashaswi Shrestha, Xaralabos Varelas, Jesse S Boehm, Anne E Carpenter

    Published 2017-03-01
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  8. 8
    Predicting compound activity from phenotypic profiles and chemical structures

    Predicting compound activity from phenotypic profiles and chemical structures by Nikita Moshkov, Tim Becker, Kevin Yang, Peter Horvath, Vlado Dancik, Bridget K. Wagner, Paul A. Clemons, Shantanu Singh, Anne E. Carpenter, Juan C. Caicedo

    Published 2023-04-01
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  9. 9
    High-content microscopy reveals a morphological signature of bortezomib resistance

    High-content microscopy reveals a morphological signature of bortezomib resistance by Megan E Kelley, Adi Y Berman, David R Stirling, Beth A Cimini, Yu Han, Shantanu Singh, Anne E Carpenter, Tarun M Kapoor, Gregory P Way

    Published 2023-09-01
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  10. 10
    Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth.

    Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth. by Sarah A Stanley, Amy K Barczak, Melanie R Silvis, Samantha S Luo, Kimberly Sogi, Martha Vokes, Mark-Anthony Bray, Anne E Carpenter, Christopher B Moore, Noman Siddiqi, Eric J Rubin, Deborah T Hung

    Published 2014-02-01
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  11. 11
    Learning representations for image-based profiling of perturbations

    Learning representations for image-based profiling of perturbations by Nikita Moshkov, Michael Bornholdt, Santiago Benoit, Matthew Smith, Claire McQuin, Allen Goodman, Rebecca A. Senft, Yu Han, Mehrtash Babadi, Peter Horvath, Beth A. Cimini, Anne E. Carpenter, Shantanu Singh, Juan C. Caicedo

    Published 2024-02-01
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  12. 12
    CellProfiler 3.0: Next-generation image processing for biology.

    CellProfiler 3.0: Next-generation image processing for biology. by Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A Cimini, Kyle W Karhohs, Minh Doan, Liya Ding, Susanne M Rafelski, Derek Thirstrup, Winfried Wiegraebe, Shantanu Singh, Tim Becker, Juan C Caicedo, Anne E Carpenter

    Published 2018-07-01
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  13. 13
    High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly

    High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly by Martin H Berryer, Gizem Rizki, Anna Nathanson, Jenny A Klein, Darina Trendafilova, Sara G Susco, Daisy Lam, Angelica Messana, Kristina M Holton, Kyle W Karhohs, Beth A Cimini, Kathleen Pfaff, Anne E Carpenter, Lee L Rubin, Lindy E Barrett

    Published 2023-04-01
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  14. 14
    High-dimensional phenotyping to define the genetic basis of cellular morphology

    High-dimensional phenotyping to define the genetic basis of cellular morphology by Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P. Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin Eggan, Marzieh Haghighi, Steven A. McCarroll, Luke O’Connor, Anne E. Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri

    Published 2024-01-01
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  15. 15
    Reference compounds for characterizing cellular injury in high-content cellular morphology assays

    Reference compounds for characterizing cellular injury in high-content cellular morphology assays by Jayme L. Dahlin, Bruce K. Hua, Beth E. Zucconi, Shawn D. Nelson, Shantanu Singh, Anne E. Carpenter, Jonathan H. Shrimp, Evelyne Lima-Fernandes, Mathias J. Wawer, Lawrence P. W. Chung, Ayushi Agrawal, Mary O’Reilly, Dalia Barsyte-Lovejoy, Magdalena Szewczyk, Fengling Li, Parnian Lak, Matthew Cuellar, Philip A. Cole, Jordan L. Meier, Tim Thomas, Jonathan B. Baell, Peter J. Brown, Michael A. Walters, Paul A. Clemons, Stuart L. Schreiber, Bridget K. Wagner

    Published 2023-03-01
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  16. 16
    In vitro neutrophil migration is associated with inhaled corticosteroid treatment and serum cytokines in pediatric asthma

    In vitro neutrophil migration is associated with inhaled corticosteroid treatment and serum cytokines in pediatric asthma by Solveig Lemmel, Markus Weckmann, Markus Weckmann, Markus Weckmann, Anna Wohlers, Adan Chari Jirmo, Ruth Grychtol, Isabell Ricklefs, Isabell Ricklefs, Gyde Nissen, Gyde Nissen, Anna Bachmann, Shantanu Singh, Juan Caicedo, Thomas Bahmer, Thomas Bahmer, Gesine Hansen, Erika Von Mutius, Klaus F. Rabe, Oliver Fuchs, Oliver Fuchs, Oliver Fuchs, Anna-Maria Dittrich, Bianca Schaub, Christine Happle, Anne E. Carpenter, Matthias Volkmar Kopp, Matthias Volkmar Kopp, Matthias Volkmar Kopp, Tim Becker, Tim Becker, Tim Becker, the ALLIANCE Study Group as part of the German Centre for Lung Research (DZL), Mustafa Abdo, Miguel Alcazar, Thomas Bahmer, Mira Berbig, Heike Biller, Xenia Bovermann, Folke Brinkmann, Mifflin-Rae Calveron, Adan Chari Jirmo, David S. DeLuca, Gesa Diekmann, Anna-Maria Dittrich, Christian Dopfer, Markus Ege, Svenja Foth, Oliver Fuchs, Svenja Gaedcke, Karoline I. Gaede, Ruth Grychtol, Anika Habener, Gesine Hansen, Christine Happle, Christian Herzmann, Alexander Hose, Sabina Illi, Anne-Marie Kirsten, Naschla Kohistani-Greif, Inke R. König, Silke Van Koningsbruggen-Rietschel, Matthias V. Kopp, Johanna Kurz, Katja Landgraf-Rauf, Kristina Laubhahn, Lena Liboschik, Claudia Liebl, Berrit Liselotte Husstedt, Bin Liu, Nicole Maison, Aydin Malik, Carola Marzi, Meike Meyer, Erika Von Mutius, Gyde Nissen, Catharina Nitsche, Frauke Pedersen, Mareike Price, Klaus F. Rabe, Harald Renz, Isabell Ricklefs, Ernst Rietschel, Barbara Roesler, Bianca Schaub, Christina Schauberger, Tom Schildberg, Carsten Schmidt-Weber, Nicolaus Schwerk, Chrysanthi Skevaki, Alena Steinmetz, Laila Sultansei, Marlen Szewczyk, Dominik Thiele, Vera Veith, Gesche Voigt, Benjamin Waschki, Henrik Watz, Stefanie Weber, Markus Weckmann, Nils Welchering, Esther Zeitlmann, Ulrich Zissler

    Published 2022-10-01
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  17. 17
    Making computer vision Methods accessible for cell classification

    Making computer vision Methods accessible for cell classification by Hung, Jane Yen.

    Published 2019
    Other Authors: “…Anne E. Carpenter and J. Christopher Love.…”
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    Thesis

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