CBEA: Competitive balances for taxonomic enrichment analysis. by Quang P Nguyen, Anne G Hoen, H Robert Frost

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Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life by Sara N. Lundgren, Juliette C. Madan, Juliette C. Madan, Juliette C. Madan, Margaret R. Karagas, Margaret R. Karagas, Hilary G. Morrison, Brock C. Christensen, Brock C. Christensen, Brock C. Christensen, Anne G. Hoen, Anne G. Hoen, Anne G. Hoen

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Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sectional Study by Joshua J. Levy, Joshua J. Levy, Joshua J. Levy, Rebecca M. Lebeaux, Rebecca M. Lebeaux, Anne G. Hoen, Anne G. Hoen, Anne G. Hoen, Brock C. Christensen, Louis J. Vaickus, Todd A. MacKenzie, Todd A. MacKenzie, Todd A. MacKenzie

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Electronic Event–based Surveillance for Monitoring Dengue, Latin America by Anne G. Hoen, Mikaela Keller, Aman D. Verma, David L. Buckeridge, John S. Brownstein

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Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life by Modupe O. Coker, Modupe O. Coker, Hannah E. Laue, Anne G. Hoen, Anne G. Hoen, Anne G. Hoen, Margaret Hilliard, Erika Dade, Zhigang Li, Thomas Palys, Hilary G. Morrison, Emily Baker, Margaret R. Karagas, Margaret R. Karagas, Margaret R. Karagas, Juliette C. Madan, Juliette C. Madan, Juliette C. Madan

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Microbial Communities in Human Milk Relate to Measures of Maternal Weight by Sara N. Lundgren, Sara N. Lundgren, Juliette C. Madan, Juliette C. Madan, Margaret R. Karagas, Margaret R. Karagas, Hilary G. Morrison, Anne G. Hoen, Anne G. Hoen, Brock C. Christensen, Brock C. Christensen, Brock C. Christensen

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Usefulness of School Absenteeism Data for Predicting Influenza Outbreaks, United States by Joseph R. Egger, Anne G. Hoen, John S. Brownstein, David L. Buckeridge, Donald R. Olson, Kevin J. Konty

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Identification of microbial interaction network: zero-inflated latent Ising model based approach by Jie Zhou, Weston D. Viles, Boran Lu, Zhigang Li, Juliette C. Madan, Margaret R. Karagas, Jiang Gui, Anne G. Hoen

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The association between early life antibiotic exposure and the gut resistome of young children: a systematic review by Rebecca M. Lebeaux, Despina B. Karalis, Jihyun Lee, Hanna C. Whitehouse, Juliette C. Madan, Margaret R. Karagas, Anne G. Hoen

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Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner by Sara N. Lundgren, Juliette C. Madan, Jennifer A. Emond, Hilary G. Morrison, Brock C. Christensen, Margaret R. Karagas, Anne G. Hoen

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Bronchiolitis hospitalizations in rural New England: clues to disease prevention by Peter F. Wright, Anne G. Hoen, J. Dean Jarvis, Michael S. Zens, Erika F. Dade, Margaret R. Karagas, Juliana Taube, Elizabeth B. Brickley

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Association of Cesarean Delivery and Formula Supplementation with the Stool Metabolome of 6-Week-Old Infants by Anne G. Hoen, Modupe O. Coker, Juliette C. Madan, Wimal Pathmasiri, Susan McRitchie, Erika F. Dade, Brett T. Doherty, Susan Sumner, Margaret R. Karagas

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Metagenomic analysis reveals associations between salivary microbiota and body composition in early childhood by Modupe O. Coker, Rebecca M. Lebeaux, Anne G. Hoen, Yuka Moroishi, Diane Gilbert-Diamond, Erika F. Dade, Thomas J. Palys, Juliette C. Madan, Margaret R. Karagas

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Umbilical cord blood immune cell profiles in relation to the infant gut microbiome by Yuka Moroishi, Lucas A. Salas, Jie Zhou, Emily R. Baker, Anne G. Hoen, Todd M. Everson, Carmen J. Marsit, Juliette Madan, Jiang Gui, Margaret R. Karagas

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The relationship between the gut microbiome and the risk of respiratory infections among newborns by Yuka Moroishi, Jiang Gui, Anne G. Hoen, Hilary G. Morrison, Emily R. Baker, Kari C. Nadeau, Hongzhe Li, Zhigang Li, Juliette C. Madan, Margaret R. Karagas

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Maternal–Infant Factors in Relation to Extracellular Vesicle and Particle miRNA in Prenatal Plasma and in Postpartum Human Milk by Meghan E. Muse, David A. Armstrong, Anne G. Hoen, Diane Gilbert-Diamond, Jiang Gui, Thomas J. Palys, Frederick W. Kolling, Brock C. Christensen, Margaret R. Karagas, Caitlin G. Howe

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MarZIC: A Marginal Mediation Model for Zero-Inflated Compositional Mediators with Applications to Microbiome Data by Quran Wu, James O’Malley, Susmita Datta, Raad Z. Gharaibeh, Christian Jobin, Margaret R. Karagas, Modupe O. Coker, Anne G. Hoen, Brock C. Christensen, Juliette C. Madan, Zhigang Li

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The infant gut resistome is associated with E. coli and early-life exposures by Rebecca M. Lebeaux, Modupe O. Coker, Erika F. Dade, Thomas J. Palys, Hilary G. Morrison, Benjamin D. Ross, Emily R. Baker, Margaret R. Karagas, Juliette C. Madan, Anne G. Hoen

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Associations between the gut microbiome and metabolome in early life by Quang P. Nguyen, Margaret R. Karagas, Juliette C. Madan, Erika Dade, Thomas J. Palys, Hilary G. Morrison, Wimal W. Pathmasiri, Susan McRitche, Susan J. Sumner, H. Robert Frost, Anne G. Hoen

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Machine-learning analysis of cross-study samples according to the gut microbiome in 12 infant cohorts by Petri Vänni, Mysore V. Tejesvi, Niko Paalanne, Kjersti Aagaard, Gail Ackermann, Carlos A. Camargo, Merete Eggesbø, Kohei Hasegawa, Anne G. Hoen, Margaret R. Karagas, Kaija-Leena Kolho, Martin F. Laursen, Johnny Ludvigsson, Juliette Madan, Dennis Ownby, Catherine Stanton, Jakob Stokholm, Terhi Tapiainen

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