Integrating quantitative knowledge into a qualitative gene regulatory network. by Jérémie Bourdon, Damien Eveillard, Anne Siegel

Get full text

A modeling approach to evaluate the balance between bioactivation and detoxification of MeIQx in human hepatocytes by Victorien Delannée, Sophie Langouët, Nathalie Théret, Anne Siegel

Get full text

A rule-based multiscale model of hepatic stellate cell plasticity: Critical role of the inactivation loop in fibrosis progression. by Matthieu Bouguéon, Vincent Legagneux, Octave Hazard, Jérémy Bomo, Anne Siegel, Jérôme Feret, Nathalie Théret

Get full text

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints. by Marine Louarn, Guillaume Collet, Ève Barré, Thierry Fest, Olivier Dameron, Anne Siegel, Fabrice Chatonnet

Get full text

Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85 by Ibrahim Fakih, Jeanne Got, Carlos Eduardo Robles-Rodriguez, Anne Siegel, Evelyne Forano, Rafael Muñoz-Tamayo

Get full text

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines by Elham Karimi, Enora Geslain, Arnaud Belcour, Clémence Frioux, Méziane Aïte, Anne Siegel, Erwan Corre, Simon M. Dittami

Get full text

Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways by Maëlle Zonnequin, Arnaud Belcour, Arnaud Belcour, Ludovic Delage, Anne Siegel, Samuel Blanquart, Catherine Leblanc, Gabriel V. Markov

Get full text

SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects. by Baptiste Ruiz, Arnaud Belcour, Samuel Blanquart, Sylvie Buffet-Bataillon, Isabelle Le Huërou-Luron, Anne Siegel, Yann Le Cunff

Get full text

Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks by Julie Laniau, Clémence Frioux, Jacques Nicolas, Caroline Baroukh, Maria-Paz Cortes, Jeanne Got, Camille Trottier, Damien Eveillard, Anne Siegel

Get full text

Editorial: Applications of biological networks in biomedicine by Vinicius Maracaja-Coutinho, Vinicius Maracaja-Coutinho, Alex Di Genova, Alex Di Genova, Anne Siegel, Mauricio Latorre, Mauricio Latorre, Mauricio Latorre

Get full text

Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae <i>Saccharina japonica</i> and <i>Cladosiphon okamuranus</i> by Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen, Xi Liu, Philippe Bordron, Olivier Godfroy, Agnieszka P. Lipinska, Catherine Leblanc, Anne Siegel, Simon M. Dittami, Erwan Corre, Gabriel V. Markov

Get full text

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. by Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got, María Paz Cortés, Sebastián N Mendoza, Grégory Carrier, Olivier Dameron, Nicolas Guillaudeux, Mauricio Latorre, Nicolás Loira, Gabriel V Markov, Alejandro Maass, Anne Siegel

Get full text