Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease Surveillance by Annika Brinkmann, Andreas Nitsche, Claudia Kohl

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A cross-sectional screening by next-generation sequencing reveals Rickettsia, Coxiella, Francisella, Borrelia, Babesia, Theileria and Hemolivia species in ticks from Anatolia by Annika Brinkmann, Olcay Hekimoğlu, Ender Dinçer, Peter Hagedorn, Andreas Nitsche, Koray Ergünay

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Whole genome sequencing of recombinant viruses obtained from co-infection and superinfection of Vero cells with modified vaccinia virus ankara vectored influenza vaccine and a natu... by Diana Diaz-Cánova, Ugo Moens, Annika Brinkmann, Andreas Nitsche, Malachy Ifeanyi Okeke

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Genomic Sequencing and Analysis of a Novel Human Cowpox Virus With Mosaic Sequences From North America and Old World Orthopoxvirus by Diana Diaz-Cánova, Ugo L. Moens, Annika Brinkmann, Andreas Nitsche, Malachy Ifeanyi Okeke

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Gene duplication, gene loss, and recombination events with variola virus shaped the complex evolutionary path of historical American horsepox-based smallpox vaccines by Aline R. V. Souza, Annika Brinkmann, José Esparza, Andreas Nitsche, Clarissa R. Damaso

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Re-assembly of nineteenth-century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the USA by Annika Brinkmann, Aline R. V. Souza, José Esparza, Andreas Nitsche, Clarissa R. Damaso

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Protocol for Metagenomic Virus Detection in Clinical Specimens by Claudia Kohl, Annika Brinkmann, Piotr W. Dabrowski, Aleksandar Radonić, Andreas Nitsche, Andreas Kurth

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Genomic Sequencing and Phylogenomics of Cowpox Virus by Diana Diaz-Cánova, Carla Mavian, Annika Brinkmann, Andreas Nitsche, Ugo Moens, Malachy Ifeanyi Okeke

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The virome of German bats: comparing virus discovery approaches by Claudia Kohl, Annika Brinkmann, Aleksandar Radonić, Piotr Wojtek Dabrowski, Kristin Mühldorfer, Andreas Nitsche, Gudrun Wibbelt, Andreas Kurth

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First detection of bat-borne Issyk-Kul virus in Europe by Annika Brinkmann, Claudia Kohl, Aleksandar Radonić, Piotr Wojtek Dabrowski, Kristin Mühldorfer, Andreas Nitsche, Gudrun Wibbelt, Andreas Kurth

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Novel paramyxoviruses in free-ranging European bats. by Andreas Kurth, Claudia Kohl, Annika Brinkmann, Arnt Ebinger, Jennifer A Harper, Lin-Fa Wang, Kristin Mühldorfer, Gudrun Wibbelt

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Isolation and characterization of three mammalian orthoreoviruses from European bats. by Claudia Kohl, René Lesnik, Annika Brinkmann, Arnt Ebinger, Aleksandar Radonić, Andreas Nitsche, Kristin Mühldorfer, Gudrun Wibbelt, Andreas Kurth

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Survey and Characterization of Jingmen Tick Virus Variants by Ender Dinçer, Sabri Hacıoğlu, Sırrı Kar, Nergis Emanet, Annika Brinkmann, Andreas Nitsche, Aykut Özkul, Yvonne-Marie Linton, Koray Ergünay

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Utility of a Sequence-Independent, Single-Primer-Amplification (SISPA) and Nanopore Sequencing Approach for Detection and Characterization of Tick-Borne Viral Pathogens by Annika Brinkmann, Steven Uddin, Eva Krause, Rebecca Surtees, Ender Dinçer, Sırrı Kar, Sabri Hacıoğlu, Aykut Özkul, Koray Ergünay, Andreas Nitsche

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AmpliCoV: Rapid Whole-Genome Sequencing Using Multiplex PCR Amplification and Real-Time Oxford Nanopore MinION Sequencing Enables Rapid Variant Identification of SARS-CoV-2 by Annika Brinkmann, Sophie-Luisa Ulm, Steven Uddin, Sophie Förster, Dominique Seifert, Rainer Oehme, Merle Corty, Lars Schaade, Janine Michel, Andreas Nitsche

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RespiCoV: Simultaneous identification of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and 46 respiratory tract viruses and bacteria by amplicon-based Oxford-Nanopor... by Annika Brinkmann, Steven Uddin, Sophie-Luisa Ulm, Katharina Pape, Sophie Förster, Khalid Enan, Jalal Nourlil, Eva Krause, Lars Schaade, Janine Michel, Andreas Nitsche

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Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey by Ender Dinçer, Annika Brinkmann, Olcay Hekimoğlu, Sabri Hacıoğlu, Katalin Földes, Zeynep Karapınar, Pelin Fatoş Polat, Bekir Oğuz, Özlem Orunç Kılınç, Peter Hagedorn, Nurdan Özer, Aykut Özkul, Andreas Nitsche, Koray Ergünay

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Resource-efficient internally controlled in-house real-time PCR detection of SARS-CoV-2 by Janine Michel, Markus Neumann, Eva Krause, Thomas Rinner, Therese Muzeniek, Marica Grossegesse, Georg Hille, Franziska Schwarz, Andreas Puyskens, Sophie Förster, Barbara Biere, Daniel Bourquain, Cristina Domingo, Annika Brinkmann, Lars Schaade, Livia Schrick, Andreas Nitsche

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Analysis of two choir outbreaks acting in concert to characterize long- range transmission risks through SARS-CoV-2, Berlin, Germany, 2020. by Felix Reichert, Oliver Stier, Anne Hartmann, Claudia Ruscher, Annika Brinkmann, Marica Grossegesse, Markus Neumann, Dirk Werber, Marius Hausner, Mareike Kunze, Bettina Weiß, Janine Michel, Andreas Nitsche, Matthias An der Heiden, Martin Kriegel, Victor Max Corman, Terry Carleton Jones, Christian Drosten, Tobias Brommann, Udo Buchholz

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Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community by Claudia Sala, Hanne Mordhorst, Josephine Grützke, Annika Brinkmann, Thomas N. Petersen, Casper Poulsen, Paul D. Cotter, Fiona Crispie, Richard J. Ellis, Gastone Castellani, Clara Amid, Mikhayil Hakhverdyan, Soizick Le Guyader, Gerardo Manfreda, Joël Mossong, Andreas Nitsche, Catherine Ragimbeau, Julien Schaeffer, Joergen Schlundt, Moon Y. F. Tay, Frank M. Aarestrup, Rene S. Hendriksen, Sünje Johanna Pamp, Alessandra De Cesare

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