Interactive analysis of campylobacter contamination in fresh retail chickens by Varga, MJ, Colles, F, Cody, A, McCarthy, ND, Ansari, MA, Maiden, M

A systematic review of Hepatitis B virus (HBV) prevalence and genotypes in Kenya: data to inform clinical care and health policy by Downs, LO, Campbell, C, Yonga, P, Githinji, G, Ansari, MA, Matthews, PC, Etyang, AO

Inference of Host–Pathogen Interaction Matrices from Genome-Wide Polymorphism Data by Märkle, H, John, S, Metzger, L, STOP-HCV Consortium, Ansari, MA, Pedergnana, V, Tellier, A

Inference of Host–Pathogen Interaction Matrices from Genome-Wide Polymorphism Data by Märkle, H, John, S, Metzger, L, STOP-HCV Consortium, Ansari, MA, Pedergnana, V, Tellier, A

Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus by Simmonds, P, Kuypers, L, Irving, WL, McLauchlan, J, Cooke, GS, Barnes, E, Ansari, MA

Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero‐surveys in 2007 and 2019 by Alamneh, TS, Walker, JG, Lim, AG, Alam, E, Hamid, S, Foster, GR, Choudhry, N, Ansari, MA, Qureshi, H, Vickerman, P

The design and development of a multi-hbv antigen encoded in chimpanzee adenoviral and modified vaccinia ankara viral vectors; a novel therapeutic vaccine strategy against HBV by Chinnakannan, SK, Cargill, TN, Donnison, TA, Ansari, MA, Sebastian, S, Lee, LN, Hutchings, C, Klenerman, P, Maini, MK, Evans, T, Barnes, E

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype by Goh, C, Burnham, KL, Ansari, MA, de Cesare, M, Golubchik, T, Hutton, P, Overend, LE, Davenport, EE, Hinds, CJ, Bowden, R, Knight, JC

An enrichment protocol and analysis pipeline for long read sequencing of the hepatitis B virus transcriptome by Ng, E, Dobrica, M-O, Harris, JM, Wu, Y, Tsukuda, S, Wing, PAC, Piazza, P, Balfe, P, Matthews, PC, Ansari, MA, McKeating, JA

Efficacy of ultra-short, response-guided sofosbuvir and daclatasvir therapy for hepatitis C in a single-arm mechanistic pilot study by Flower, B, Hung, LM, Mccabe, L, Ansari, MA, Hoglund, RM, Tarning, J, Kestelyn, E, van Doorn, R, Van Nuil, JI, Thwaites, GE, Barnes, E, Rahman, M, Walker, AS, Day, JN

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure by Smith, DA, Fernandez-Antunez, C, Magri, A, Bowden, R, Chaturvedi, N, Fellay, J, McLauchlan, J, Foster, GR, Irving, WL, Barnes, E, Simmonds, P, Pedergnana, V, Ramirez, S, Bukh, J, Ansari, MA

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV) by McNaughton, AL, Roberts, HE, Bonsall, D, De Cesare, M, Mokaya, J, Lumley, SF, Golubchik, T, Piazza, P, Martin, J, De Lara, C, Brown, A, Ansari, MA, Bowden, R, Barnes, E, Matthews, P

Simultaneous viral whole-genome sequencing and differential expression profiling in respiratory syncytial virus infection of infants by Lin, G-L, Golubchik, T, Drysdale, S, O'Connor, D, Jefferies, K, Brown, A, de Cesare, M, Bonsall, D, Ansari, MA, Aerssens, J, Bont, L, Openshaw, P, Martinón-Torres, F, Bowden, R, Pollard, AJ

HIV genotyping and phylogenetics in the HPTN 071 (PopART) study: validation of a high-throughput sequencing assay for viral load quantification, genotyping, resistance testing and... by Bonsall, D, Golubchik, T, Kosloff, B, Limbada, M, De Cesare, M, Schaap, A, Hall, M, Wymant, C, Macintyre-Cockett, G, Brown, A, Ansari, MA, Floyd, S, Hayes, R, Ayles, H, Fidler, S, Fraser, C, Grp, HPTNPS

Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy by Smith, DA, Bradshaw, D, Mbisa, J, Manso, CF, Bibby, D, Singer, J, Thomson, E, Filipe, A, Aranday-Cortes, E, Ansari, MA, Brown, A, Hudson, E, Benselin, J, Healy, B, Troke, P, McLauchlan, J, Barnes, E, Irving, WL

Endemic HBV among hospital in-patients in Bangladesh, including evidence of occult infection. by Chowdhury, FR, McNaughton, AL, Amin, MR, Barai, L, Saha, MR, Rahman, T, Das, BC, Hasan, MR, Islam, KMS, Faiz, MA, Al-Mahtab, M, Mokaya, J, Kronsteiner, B, Jeffery, K, Andersson, MI, de Cesare, M, Ansari, MA, Dunachie, S, Matthews, PC

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data by Mayne, R, Secret, S, Geoghegan, C, Trebes, A, Kean, K, Reid, K, Lin, G, Ansari, MA, de Cesare, M, Bonsall, D, Elliott, I, Piazza, P, Brown, A, Bray, J, Knight, JC, Harvala, H, Breuer, J, Simmonds, P, Bowden, RJ, Golubchik, T

Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus by Lin, G-L, Drysdale, SB, Snape, MD, O'Connor, D, Brown, A, MacIntyre-Cockett, G, Mellado-Gomez, E, de Cesare, M, Bonsall, D, Ansari, MA, Öner, D, Aerssens, J, Butler, C, Bont, L, Openshaw, P, Martinón-Torres, F, Nair, H, Bowden, R, Golubchik, T, Pollard, AJ

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus by Lin, G-L, Drysdale, SB, Snape, MD, O'Connor, D, Brown, A, MacIntyre-Cockett, G, Mellado-Gomez, E, de Cesare, M, Ansari, MA, Bonsall, D, Bray, JE, Jolley, KA, Bowden, R, Aerssens, J, Bont, L, Openshaw, PJM, Martinon-Torres, F, Nair, H, Golubchik, T, Pollard, AJ

Variable short duration treatment versus standard treatment, with and without adjunctive ribavirin, for chronic hepatitis C: the STOP-HCV-1 non-inferiority, factorial RCT by Cooke, GS, Pett, SL, McCabe, L, Jones, C, Gilson, R, Verma, S, Ryder, SD, Collier, JD, Barclay, ST, Ala, A, Bhagani, S, Nelson, M, Ch'Ng, CL, Stone, B, Wiselka, M, Forton, D, McPherson, S, Halford, R, Nguygen, D, Smith, D, Ansari, MA, Ainscough, H, Dennis, E, Hudson, F, Barnes, EJ, Walker, AS