Proportion-based normalizations outperform compositional data transformations in machine learning applications by Aaron Yerke, Daisy Fry Brumit, Anthony A. Fodor

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HashSeq: a Simple, Scalable, and Conservative De Novo Variant Caller for 16S rRNA Gene Data Sets by Farnaz Fouladi, Jacqueline B. Young, Anthony A. Fodor

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Loss of Novel Diversity in Human Gut Microbiota Associated with Ongoing Urbanization in China by Shan Sun, Huijun Wang, Annie Green Howard, Jiguo Zhang, Chang Su, Zhihong Wang, Shufa Du, Anthony A. Fodor, Penny Gordon-Larsen, Bing Zhang

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Vaginal Microbiome Metagenome Inference Accuracy: Differential Measurement Error according to Community Composition by Kayla A. Carter, Anthony A. Fodor, Jennifer E. Balkus, Angela Zhang, Myrna G. Serrano, Gregory A. Buck, Stephanie M. Engel, Michael C. Wu, Shan Sun

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Mouse adaptation of human inflammatory bowel diseases microbiota enhances colonization efficiency and alters microbiome aggressiveness depending on the recipient colonic inflammato... by Simon M. Gray, Anh D. Moss, Jeremy W. Herzog, Saori Kashiwagi, Bo Liu, Jacqueline B. Young, Shan Sun, Aadra P. Bhatt, Anthony A. Fodor, R. Balfour Sartor

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Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats by Linda Tsan, Sandrine Chometton, Anna M.R. Hayes, Molly E. Klug, Yanning Zuo, Shan Sun, Lana Bridi, Rae Lan, Anthony A. Fodor, Emily E. Noble, Xia Yang, Scott E. Kanoski, Lindsey A. Schier

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Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats by Linda Tsan, Sandrine Chometton, Anna M.R. Hayes, Molly E. Klug, Yanning Zuo, Shan Sun, Lana Bridi, Rae Lan, Anthony A. Fodor, Emily E. Noble, Xia Yang, Scott E. Kanoski, Lindsey A. Schier

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Human Colon Mucosal Biofilms and Murine Host Communicate via Altered mRNA and microRNA Expression during Cancer by Sarah Tomkovich, Raad Z. Gharaibeh, Christine M. Dejea, Jillian L. Pope, Jinmai Jiang, Kathryn Winglee, Josee Gauthier, Rachel C. Newsome, Ye Yang, Anthony A. Fodor, Thomas D. Schmittgen, Cynthia L. Sears, Christian Jobin

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Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing by Farnaz Fouladi, Maximilian J. Bailey, William B. Patterson, Michael Sioda, Ivory C. Blakley, Anthony A. Fodor, Roshonda B. Jones, Zhanghua Chen, Jeniffer S. Kim, Frederick Lurmann, Cameron Martino, Rob Knight, Frank D. Gilliland, Tanya L. Alderete

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A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflamm... by Rachel M. Bleich, Chuang Li, Shan Sun, Ju-Hyun Ahn, Belgin Dogan, Cassandra J. Barlogio, Christopher A. Broberg, Adrienne R. Franks, Emily Bulik-Sullivan, Ian M. Carroll, Kenneth W. Simpson, Anthony A. Fodor, Janelle C. Arthur

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Batch effects removal for microbiome data via conditional quantile regression by Wodan Ling, Jiuyao Lu, Ni Zhao, Anju Lulla, Anna M. Plantinga, Weijia Fu, Angela Zhang, Hongjiao Liu, Hoseung Song, Zhigang Li, Jun Chen, Timothy W. Randolph, Wei Li A. Koay, James R. White, Lenore J. Launer, Anthony A. Fodor, Katie A. Meyer, Michael C. Wu

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Giardia antagonizes beneficial functions of indigenous and therapeutic intestinal bacteria during protein deficiency by Aadra P. Bhatt, Jason W. Arnold, Muyiwa Awoniyi, Shan Sun, Verônica Feijoli Santiago, Deniz Coskuner, Pedro Henrique Quintela, Kenneth Walsh, Jamie Xiao, Renay Ngobeni-Nyambi, Brenna Hansen, Ajay S. Gulati, Ian M. Carroll, M. Andrea Azcarate-Peril, Anthony A. Fodor, Jonathan Swann, Luther A. Bartelt

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Calorie restriction outperforms bariatric surgery in a murine model of obesity and triple-negative breast cancer by Kristina K. Camp, Michael F. Coleman, Tori L. McFarlane, Steven S. Doerstling, Subreen A. Khatib, Erika T. Rezeli, Alfor G. Lewis, Alexander J. Pfeil, Laura A. Smith, Laura W. Bowers, Farnaz Fouladi, Weida Gong, Elaine M. Glenny, Joel S. Parker, Ginger L. Milne, Ian M. Carroll, Anthony A. Fodor, Randy J. Seeley, Stephen D. Hursting

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Giardia hinders growth by disrupting nutrient metabolism independent of inflammatory enteropathy by Natasa Giallourou, Jason Arnold, Elizabeth T. Rogawski McQuade, Muyiwa Awoniyi, Rose Viguna Thomas Becket, Kenneth Walsh, Jeremy Herzog, Ajay S. Gulati, Ian M. Carroll, Stephanie Montgomery, Pedro Henrique Quintela, Angela M. Faust, Steven M. Singer, Anthony A. Fodor, Tahmeed Ahmad, Mustafa Mahfuz, Esto Mduma, Thomas Walongo, Richard L. Guerrant, R. Balfour Sartor, Jonathan R. Swann, Margaret N. Kosek, Luther A. Bartelt

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