Visualisation of BioPAX Networks using BioLayout Express3D [v1; ref status: indexed, http://f1000r.es/4j1] by Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman

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Correction: Human MicroRNA Targets. by Bino John, Anton J Enright, Alexei Aravin, Thomas Tuschl, Chris Sander, Debora S Marks

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The in vivo RNA structurome of the malaria parasite Plasmodium falciparum, a protozoan with an A/U-rich transcriptome. by Franck Dumetz, Anton J Enright, Jieyu Zhao, Chun Kit Kwok, Catherine J Merrick

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Human MicroRNA targets. by Bino John, Anton J Enright, Alexei Aravin, Thomas Tuschl, Chris Sander, Debora S Marks

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MiR-221 influences effector functions and actin cytoskeleton in mast cells. by Ramon J Mayoral, Lorenzo Deho, Nicole Rusca, Nenad Bartonicek, Harpreet Kaur Saini, Anton J Enright, Silvia Monticelli

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Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response by Evgeniya V. Shmeleva, Mercedes Gomez de Agüero, Josef Wagner, Anton J. Enright, Andrew J. Macpherson, Brian J. Ferguson, Geoffrey L. Smith

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Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. by Evgeniya V Shmeleva, Mercedes Gomez de Agüero, Josef Wagner, Anton J Enright, Andrew J Macpherson, Brian J Ferguson, Geoffrey L Smith

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Construction, visualisation, and clustering of transcription networks from microarray expression data. by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright

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CGG toolkit: Software components for computational genomics. by Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag Ahrén, Paul J Janssen, Ioannis Iliopoulos, Vasilis J Promponas, Anton J Enright, Christos A Ouzounis

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CGG toolkit: Software components for computational genomics by Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis

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Correction: MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. by Anna V Protasio, Stijn van Dongen, Julie Collins, Leonor Quintais, Diogo M Ribeiro, Florian Sessler, Martin Hunt, Gabriel Rinaldi, James J Collins, Anton J Enright, Matthew Berriman

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MiR-25 regulates Wwp2 and Fbxw7 and promotes reprogramming of mouse fibroblast cells to iPSCs. by Dong Lu, Matthew P A Davis, Cei Abreu-Goodger, Wei Wang, Lia S Campos, Julia Siede, Elena Vigorito, William C Skarnes, Ian Dunham, Anton J Enright, Pentao Liu

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Correction: MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni by Anna V. Protasio, Stijn van Dongen, Julie Collins, Leonor Quintais, Diogo M. Ribeiro, Florian Sessler, Martin Hunt, Gabriel Rinaldi, James J. Collins, Anton J. Enright, Matthew Berriman

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Identification of Recurrent Mutations in the microRNA-Binding Sites of B-Cell Lymphoma-Associated Genes in Follicular Lymphoma by Erika Larrea, Marta Fernandez-Mercado, José Afonso Guerra-Assunção, Jun Wang, Ibai Goicoechea, Ayman Gaafar, Izaskun Ceberio, Carmen Lobo, Jessica Okosun, Anton J. Enright, Jude Fitzgibbon, Charles H. Lawrie

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Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines. by Matthew P A Davis, Cei Abreu-Goodger, Stijn van Dongen, Dong Lu, Peri H Tate, Nenad Bartonicek, Claudia Kutter, Pentao Liu, William C Skarnes, Anton J Enright, Ian Dunham

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RNA sequencing and lipidomics uncovers novel pathomechanisms in recessive X-linked ichthyosis by Farrell McGeoghan, Emanuela Camera, Miriam Maiellaro, Manasi Menon, Mei Huang, Priya Dewan, Stela Ziaj, Matthew P. Caley, Michael Donaldson, Anton J. Enright, Edel A. O’Toole, Edel A. O’Toole

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Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis. by Ian J Groves, Emma L A Drane, Marco Michalski, Jack M Monahan, Cinzia G Scarpini, Stephen P Smith, Giovanni Bussotti, Csilla Várnai, Stefan Schoenfelder, Peter Fraser, Anton J Enright, Nicholas Coleman

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The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis by Luisa Capalbo, Zuni I. Bassi, Marco Geymonat, Sofia Todesca, Liviu Copoiu, Anton J. Enright, Giuliano Callaini, Maria Giovanna Riparbelli, Lu Yu, Jyoti S. Choudhary, Enrico Ferrero, Sally Wheatley, Max E. Douglas, Masanori Mishima, Pier Paolo D’Avino

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A high-resolution mRNA expression time course of embryonic development in zebrafish by Richard J White, John E Collins, Ian M Sealy, Neha Wali, Christopher M Dooley, Zsofia Digby, Derek L Stemple, Daniel N Murphy, Konstantinos Billis, Thibaut Hourlier, Anja Füllgrabe, Matthew P Davis, Anton J Enright, Elisabeth M Busch-Nentwich

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Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci by Paulo P. Amaral, Tommaso Leonardi, Namshik Han, Emmanuelle Viré, Dennis K. Gascoigne, Raúl Arias-Carrasco, Magdalena Büscher, Luca Pandolfini, Anda Zhang, Stefano Pluchino, Vinicius Maracaja-Coutinho, Helder I. Nakaya, Martin Hemberg, Ramin Shiekhattar, Anton J. Enright, Tony Kouzarides

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