mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data by Antony Kaspi, Mark Ziemann

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Systems approach to the pharmacological actions of HDAC inhibitors reveals EP300 activities and convergent mechanisms of regulation in diabetes by Haloom Rafehi, Antony Kaspi, Mark Ziemann, Jun Okabe, Tom C. Karagiannis, Assam El-Osta

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Transcription factors Tp73, Cebpd, Pax6, and Spi1 rather than DNA methylation regulate chronic transcriptomics changes after experimental traumatic brain injury by Anssi Lipponen, Assam El-Osta, Antony Kaspi, Mark Ziemann, Ishant Khurana, Harikrishnan KN, Vicente Navarro-Ferrandis, Noora Puhakka, Jussi Paananen, Asla Pitkänen

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DNA methylation patterns from peripheral blood separate coronary artery disease patients with and without heart failure by Chris R. Bain, Mark Ziemann, Antony Kaspi, Abdul Waheed Khan, Rachael Taylor, Hugh Trahair, Ishant Khurana, Harikrishnan Kaipananickal, Sophie Wallace, Assam El‐Osta, Paul S. Myles, Kiymet Bozaoglu

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Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium. by Reo Maruyama, Sibgat Choudhury, Adam Kowalczyk, Marina Bessarabova, Bryan Beresford-Smith, Thomas Conway, Antony Kaspi, Zhenhua Wu, Tatiana Nikolskaya, Vanessa F Merino, Pang-Kuo Lo, X Shirley Liu, Yuri Nikolsky, Saraswati Sukumar, Izhak Haviv, Kornelia Polyak

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Rapid development of non-alcoholic steatohepatitis in Psammomys obesus (Israeli sand rat). by Briana Spolding, Timothy Connor, Carrie Wittmer, Lelia L F Abreu, Antony Kaspi, Mark Ziemann, Gunveen Kaur, Adrian Cooper, Shona Morrison, Scott Lee, Andrew Sinclair, Yann Gibert, James L Trevaskis, Jonathon D Roth, Assam El-Osta, Richard Standish, Ken Walder

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Age-Related Differential Structural and Transcriptomic Responses in the Hypertensive Heart by Francine Z. Marques, Francine Z. Marques, Po-Yin Chu, Mark Ziemann, Antony Kaspi, Helen Kiriazis, Xiao-Jun Du, Xiao-Jun Du, Assam El-Osta, Assam El-Osta, Assam El-Osta, David M. Kaye, David M. Kaye, David M. Kaye

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Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals. by Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta Alison Holmes, Chia-Yen Dai, Chung-Feng Huang, Raymond T Chung, Assy Nimer, Assam El-Osta, Gur Yaari, Salomon M Stemmer, Ming-Lung Yu, Izhak Haviv, Meital Gal-Tanamy

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Reduced methylation correlates with diabetic nephropathy risk in type 1 diabetes by Ishant Khurana, Harikrishnan Kaipananickal, Scott Maxwell, Sørine Birkelund, Anna Syreeni, Carol Forsblom, Jun Okabe, Mark Ziemann, Antony Kaspi, Haloom Rafehi, Anne Jørgensen, Keith Al-Hasani, Merlin C. Thomas, Guozhi Jiang, Andrea O.Y. Luk, Heung Man Lee, Yu Huang, Yotsapon Thewjitcharoen, Soontaree Nakasatien, Thep Himathongkam, Christopher Fogarty, Rachel Njeim, Assaad Eid, Tine Willum Hansen, Nete Tofte, Evy C. Ottesen, Ronald C.W. Ma, Juliana C.N. Chan, Mark E. Cooper, Peter Rossing, Per-Henrik Groop, Assam El-Osta

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