Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions by Arif Harmanci, Mark Gerstein

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SVAT: Secure outsourcing of variant annotation and genotype aggregation by Miran Kim, Su Wang, Xiaoqian Jiang, Arif Harmanci

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Federated generalized linear mixed models for collaborative genome-wide association studies by Wentao Li, Han Chen, Xiaoqian Jiang, Arif Harmanci

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SVFX: a machine learning framework to quantify the pathogenicity of structural variants by Sushant Kumar, Arif Harmanci, Jagath Vytheeswaran, Mark B. Gerstein

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XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples by Arif Harmanci, Akdes Serin Harmanci, Tiemo J. Klisch, Akash J. Patel

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COLLAGENE enables privacy-aware federated and collaborative genomic data analysis by Wentao Li, Miran Kim, Kai Zhang, Han Chen, Xiaoqian Jiang, Arif Harmanci

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Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis by Jyothishmathi Swaminathan, Shinji Maegawa, Shavali Shaik, Ajay Sharma, Javiera Bravo-Alegria, Lei Guo, Lin Xu, Arif Harmanci, Vidya Gopalakrishnan, Vidya Gopalakrishnan, Vidya Gopalakrishnan, Vidya Gopalakrishnan, Vidya Gopalakrishnan

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An integrative ENCODE resource for cancer genomics by Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T. Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J. Klein, Michael Snyder, David M. Gilbert, Kevin Yip, Chao Cheng, Feng Yue, X. Shirley Liu, Kevin P. White, Mark Gerstein

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