Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing by Armen Abnousi, Shira L. Broschat, Ananth Kalyanaraman

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A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions. by Armen Abnousi, Shira L Broschat, Ananth Kalyanaraman

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HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets by Jonathan Rosen, Lindsay Lee, Armen Abnousi, Jiawen Chen, Jia Wen, Ming Hu, Yun Li

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SnapHiC2: A computationally efficient loop caller for single cell Hi-C data by Xiaoqi Li, Lindsay Lee, Armen Abnousi, Miao Yu, Weifang Liu, Le Huang, Yun Li, Ming Hu

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MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples by Weifang Liu, Yuchen Yang, Armen Abnousi, Qian Zhang, Naoki Kubo, Joshua S. Martin Beem, Yun Li, Ming Hu

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HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets by Jonathan D. Rosen, Yuchen Yang, Armen Abnousi, Jiawen Chen, Michael Song, Ian R. Jones, Yin Shen, Ming Hu, Yun Li

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FIREcaller: Detecting frequently interacting regions from Hi-C data by Cheynna Crowley, Yuchen Yang, Yunjiang Qiu, Benxia Hu, Armen Abnousi, Jakub Lipiński, Dariusz Plewczyński, Di Wu, Hyejung Won, Bing Ren, Ming Hu, Yun Li

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MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. by Ivan Juric, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu, Ming Hu

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