A colony multiplex quantitative PCR-Based 3S3DBC method and variations of it for screening DNA libraries. by Yang An, Atsushi Toyoda, Chen Zhao, Asao Fujiyama, Kiyokazu Agata

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Dynamics of Dark-Fly Genome Under Environmental Selections by Minako Izutsu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse

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The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression. by Mark Ravinet, Kohta Yoshida, Shuji Shigenobu, Atsushi Toyoda, Asao Fujiyama, Jun Kitano

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Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution by Yuka Sekigami, Takuya Kobayashi, Ai Omi, Koki Nishitsuji, Tetsuro Ikuta, Asao Fujiyama, Noriyuki Satoh, Hidetoshi Saiga

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Genome features of "Dark-fly", a Drosophila line reared long-term in a dark environment. by Minako Izutsu, Jun Zhou, Yuzo Sugiyama, Osamu Nishimura, Tomoyuki Aizu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse

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Androgen and Oestrogen Affect the Expression of Long Non-Coding RNAs During Phallus Development in a Marsupial by Yu Chen, Yoko Kuroki, Geoff Shaw, Andrew J. Pask, Hongshi Yu, Atsushi Toyoda, Asao Fujiyama, Marilyn B. Renfree

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Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions by Rei Kajitani, Dai Yoshimura, Miki Okuno, Yohei Minakuchi, Hiroshi Kagoshima, Asao Fujiyama, Kaoru Kubokawa, Yuji Kohara, Atsushi Toyoda, Takehiko Itoh

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Correction: A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species. by Shosei Kubota, Takaya Iwasaki, Kousuke Hanada, Atsushi J Nagano, Asao Fujiyama, Atsushi Toyoda, Sumio Sugano, Yutaka Suzuki, Kouki Hikosaka, Motomi Ito, Shin-Ichi Morinaga

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Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes. by Tokurou Shimizu, Akira Kitajima, Keisuke Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura

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A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species. by Shosei Kubota, Takaya Iwasaki, Kousuke Hanada, Atsushi J Nagano, Asao Fujiyama, Atsushi Toyoda, Sumio Sugano, Yutaka Suzuki, Kouki Hikosaka, Motomi Ito, Shin-Ichi Morinaga

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Sex chromosome turnover contributes to genomic divergence between incipient stickleback species. by Kohta Yoshida, Takashi Makino, Katsushi Yamaguchi, Shuji Shigenobu, Mitsuyasu Hasebe, Masakado Kawata, Manabu Kume, Seiichi Mori, Catherine L Peichel, Atsushi Toyoda, Asao Fujiyama, Jun Kitano

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Genome-Wide Analysis of DNA Methylation and Expression of MicroRNAs in Breast Cancer Cells by Takahiro Ochiya, Ryo Matoba, Shoji Tajima, Kenta Nakai, Asao Fujiyama, Mika Kimura, Takuro Horii, Atsushi Toyoda, Riu Yamashita, Ryou-u Takahashi, Sumiyo Morita, Izuho Hatada

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Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis. by Tasuku Ito, Yoshiaki Tarutani, Taiko Kim To, Mohamed Kassam, Evelyne Duvernois-Berthet, Sandra Cortijo, Kazuya Takashima, Hidetoshi Saze, Atsushi Toyoda, Asao Fujiyama, Vincent Colot, Tetsuji Kakutani

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Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation. by Daiki D Horikawa, John Cumbers, Iori Sakakibara, Dana Rogoff, Stefan Leuko, Raechel Harnoto, Kazuharu Arakawa, Toshiaki Katayama, Takekazu Kunieda, Atsushi Toyoda, Asao Fujiyama, Lynn J Rothschild

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Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians by Yang An, Akane Kawaguchi, Chen Zhao, Atsushi Toyoda, Ali Sharifi-Zarchi, Seyed Ahmad Mousavi, Reza Bagherzadeh, Takeshi Inoue, Hajime Ogino, Asao Fujiyama, Hamidreza Chitsaz, Hossein Baharvand, Kiyokazu Agata

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Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade. by Ayami Yamaguchi, Sae Tanaka, Shiho Yamaguchi, Hirokazu Kuwahara, Chizuko Takamura, Shinobu Imajoh-Ohmi, Daiki D Horikawa, Atsushi Toyoda, Toshiaki Katayama, Kazuharu Arakawa, Asao Fujiyama, Takeo Kubo, Takekazu Kunieda

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Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres by Wei-Hao Shang, Tetsuya Hori, Frederick G. Westhorpe, Kristina M. Godek, Atsushi Toyoda, Sadahiko Misu, Norikazu Monma, Kazuho Ikeo, Christopher W. Carroll, Yasunari Takami, Asao Fujiyama, Hiroshi Kimura, Aaron F. Straight, Tatsuo Fukagawa

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Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes by Takashi Hamaji, Yuko Mogi, Patrick J. Ferris, Toshiyuki Mori, Shinya Miyagishima, Yukihiro Kabeya, Yoshiki Nishimura, Atsushi Toyoda, Hideki Noguchi, Asao Fujiyama, Bradley J. S. C. Olson, Tara N. Marriage, Ichiro Nishii, James G. Umen, Hisayoshi Nozaki

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Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits by Mai F. Minamikawa, Keisuke Nonaka, Eli Kaminuma, Hiromi Kajiya-Kanegae, Akio Onogi, Shingo Goto, Terutaka Yoshioka, Atsushi Imai, Hiroko Hamada, Takeshi Hayashi, Satomi Matsumoto, Yuichi Katayose, Atsushi Toyoda, Asao Fujiyama, Yasukazu Nakamura, Tokurou Shimizu, Hiroyoshi Iwata

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OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species by Hiromi Kajiya-Kanegae, Hajime Ohyanagi, Toshinobu Ebata, Yasuhiro Tanizawa, Akio Onogi, Yuji Sawada, Masami Yokota Hirai, Zi-Xuan Wang, Bin Han, Atsushi Toyoda, Asao Fujiyama, Hiroyoshi Iwata, Katsutoshi Tsuda, Toshiya Suzuki, Misuzu Nosaka-Takahashi, Ken-ichi Nonomura, Yasukazu Nakamura, Shoko Kawamoto, Nori Kurata, Yutaka Sato

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