Model selection and robust inference of mutational signatures using Negative Binomial non-negative matrix factorization Autor Marta Pelizzola, Ragnhild Laursen, Asger Hobolth

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TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting. Autor Iker Rivas-González, Mikkel H Schierup, John Wakeley, Asger Hobolth

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Significance evaluation in factor graphs Autor Tobias Madsen, Asger Hobolth, Jens Ledet Jensen, Jakob Skou Pedersen

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Algorithms for Hidden Markov Models Restricted to Occurrences of Regular Expressions Autor Thomas Mailund, Christian N. S. Pedersen, Paula Tataru, Andreas Sand, Asger Hobolth

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Detecting archaic introgression using an unadmixed outgroup. Autor Laurits Skov, Ruoyun Hui, Vladimir Shchur, Asger Hobolth, Aylwyn Scally, Mikkel Heide Schierup, Richard Durbin

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A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data Autor Johanna Bertl, Qianyun Guo, Malene Juul, Søren Besenbacher, Morten Muhlig Nielsen, Henrik Hornshøj, Jakob Skou Pedersen, Asger Hobolth

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Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate Autor Malene Juul, Johanna Bertl, Qianyun Guo, Morten Muhlig Nielsen, Michał Świtnicki, Henrik Hornshøj, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen

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A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species. Autor Thomas Mailund, Anders E Halager, Michael Westergaard, Julien Y Dutheil, Kasper Munch, Lars N Andersen, Gerton Lunter, Kay Prüfer, Aylwyn Scally, Asger Hobolth, Mikkel H Schierup

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