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Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept by Assia Saltykova, Assia Saltykova, Wesley Mattheus, Sophie Bertrand, Nancy H. C. Roosens, Kathleen Marchal, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Published 2019-12-01
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Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies by Florence E. Buytaers, Florence E. Buytaers, Assia Saltykova, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Published 2021-11-01
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Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:. by Assia Saltykova, Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy H C Roosens, Kathleen Marchal, Sigrid C J De Keersmaecker
Published 2018-01-01
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Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database by Assia Saltykova, Julien Van Braekel, Nina Papazova, Marie-Alice Fraiture, Dieter Deforce, Kevin Vanneste, Sigrid C.J. De Keersmaecker, Nancy H. Roosens
Published 2022-07-01
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Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as... by Assia Saltykova, Florence E. Buytaers, Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Published 2020-08-01
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A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine by Florence E. Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Published 2020-08-01
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