2FAST2Q: a general-purpose sequence search and counting program for FASTQ files by Afonso M. Bravo, Athanasios Typas, Jan-Willem Veening

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Towards a mechanistic understanding of reciprocal drug–microbiome interactions by Michael Zimmermann, Kiran Raosaheb Patil, Athanasios Typas, Lisa Maier

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The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae by Marco Galardini, Bede P Busby, Cristina Vieitez, Alistair S Dunham, Athanasios Typas, Pedro Beltrao

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A resource of variant effect predictions of single nucleotide variants in model organisms by Omar Wagih, Marco Galardini, Bede P Busby, Danish Memon, Athanasios Typas, Pedro Beltrao

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Transcriptional and Post-Transcriptional Polar Effects in Bacterial Gene Deletion Libraries by André Mateus, Malay Shah, Johannes Hevler, Nils Kurzawa, Jacob Bobonis, Athanasios Typas, Mikhail M. Savitski

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Correction: A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S. by Anthony L Shiver, Hendrik Osadnik, George Kritikos, Bo Li, Nevan Krogan, Athanasios Typas, Carol A Gross

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Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs. by Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil

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Thermal proteome profiling in bacteria: probing protein state in vivo by André Mateus, Jacob Bobonis, Nils Kurzawa, Frank Stein, Dominic Helm, Johannes Hevler, Athanasios Typas, Mikhail M Savitski

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Thermal proteome profiling for interrogating protein interactions by André Mateus, Nils Kurzawa, Isabelle Becher, Sindhuja Sridharan, Dominic Helm, Frank Stein, Athanasios Typas, Mikhail M Savitski

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A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella. by Karin Mitosch, Martin Beyß, Prasad Phapale, Bernhard Drotleff, Katharina Nöh, Theodore Alexandrov, Kiran R Patil, Athanasios Typas

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Unravelling metabolic cross‐feeding in a yeast–bacteria community using 13C‐based proteomics by Natalia Gabrielli, Christoniki Maga‐Nteve, Eleni Kafkia, Mandy Rettel, Jakob Loeffler, Stephan Kamrad, Athanasios Typas, Kiran Raosaheb Patil

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Transient Glycolytic Complexation of Arsenate Enhances Resistance in the Enteropathogen Vibrio cholerae by Emilio Bueno, Víctor Pinedo, Dhananjay D. Shinde, André Mateus, Athanasios Typas, Mikhail M. Savitski, Vinai C. Thomas, Felipe Cava

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An atlas of human kinase regulation by David Ochoa, Mindaugas Jonikas, Robert T Lawrence, Bachir El Debs, Joel Selkrig, Athanasios Typas, Judit Villén, Silvia DM Santos, Pedro Beltrao

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Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction by Iskander Khusainov, Natalie Romanov, Camille Goemans, Beata Turoňová, Christian E. Zimmerli, Sonja Welsch, Julian D. Langer, Athanasios Typas, Martin Beck

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Salmonella infection impacts host proteome thermal stability by Marlène S. Birk, Philipp Walch, Tarik Baykara, Stephanie Sefried, Jan Amelang, Elena Buerova, Ingrid Breuer, Jörg Vervoorts, Athanasios Typas, Mikhail M. Savitski, André Mateus, Joel Selkrig

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Phenotype inference in an Escherichia coli strain panel by Marco Galardini, Alexandra Koumoutsi, Lucia Herrera-Dominguez, Juan Antonio Cordero Varela, Anja Telzerow, Omar Wagih, Morgane Wartel, Olivier Clermont, Erick Denamur, Athanasios Typas, Pedro Beltrao

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Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics by Carlos Geert Pieter Voogdt, Surya Tripathi, Stefan Oliver Bassler, Saria A. McKeithen-Mead, Emma R. Guiberson, Alexandra Koumoutsi, Afonso Martins Bravo, Cullen Buie, Michael Zimmermann, Justin L. Sonnenburg, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang

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Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division by Andrew N Gray, Alexander JF Egan, Inge L van't Veer, Jolanda Verheul, Alexandre Colavin, Alexandra Koumoutsi, Jacob Biboy, A F Maarten Altelaar, Mirjam J Damen, Kerwyn Casey Huang, Jean-Pierre Simorre, Eefjan Breukink, Tanneke den Blaauwen, Athanasios Typas, Carol A Gross, Waldemar Vollmer

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Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction by Surya Tripathi, Carlos Geert Pieter Voogdt, Stefan Oliver Bassler, Mary Anderson, Po-Hsun Huang, Nazgul Sakenova, Tümay Capraz, Sunit Jain, Alexandra Koumoutsi, Afonso Martins Bravo, Valentine Trotter, Michael Zimmerman, Justin L. Sonnenburg, Cullen Buie, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang

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SARS‐CoV‐2 infection remodels the host protein thermal stability landscape by Joel Selkrig, Megan Stanifer, André Mateus, Karin Mitosch, Inigo Barrio‐Hernandez, Mandy Rettel, Heeyoung Kim, Carlos G P Voogdt, Philipp Walch, Carmon Kee, Nils Kurzawa, Frank Stein, Clément Potel, Anna Jarzab, Bernhard Kuster, Ralf Bartenschlager, Steeve Boulant, Pedro Beltrao, Athanasios Typas, Mikhail M Savitski

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