An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis by Cubillos-Ruiz, Andrés, Alcantar, Miguel A, Donghia, Nina M, Cárdenas, Pablo, Avila-Pacheco, Julian, Collins, James J

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Revealing disease-associated pathways by network integration of untargeted metabolomics by Leidl, Mathias, Avila-Pacheco, Julian, Pirhaji, Leila, Milani, Pamela, Curran, Timothy G., Clish, Clary, Saghatelian, Alan, Fraenkel, Ernest, White, Forest M.

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Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements by Dunn, Denise E., Avila-Pacheco, Julian, Greengard, Paul, Clish, Clary B., Lo, Donald C., Pirhaji, Leila, Milani, Pamela, Dalin, Simona, Wassie, Brook T., Fenster, Robert, Heiman, Myriam, Fraenkel, Ernest

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Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease by Bhosle, Amrisha, Bae, Sena, Zhang, Yancong, Chun, Eunyoung, Avila-Pacheco, Julian, Geistlinger, Ludwig, Pishchany, Gleb, Glickman, Jonathan N, Michaud, Monia, Waldron, Levi, Clish, Clary B, Xavier, Ramnik J, Vlamakis, Hera, Franzosa, Eric A, Garrett, Wendy S, Huttenhower, Curtis

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