SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings by Ay, Ferhat, Kellis, Manolis

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Metabolic network alignment in large scale by network compression by Ay Ferhat, Dang Michael, Kahveci Tamer

Predictive Regulatory Models in of Transcriptional Networks by Kahveci, Tamer, Marbach, Daniel, Roy, Sushmita, Ay, Ferhat, Meyer, Patrick E., Candeias, Rogerio, Bristow, Christopher A., Kellis, Manolis

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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE by Kheradpour, Pouya, Bristow, Christopher A., Mag Washietl, Stefan, Ay, Ferhat, Jungreis, Irwin, Marbach, Daniel, Sealfon, Rachel Sima, Will, Sebastian, Berger, Bonnie, Kellis, Manolis, Roy, Sushmita, Ernst, Jason, Lin, Michael F., Meyer, Patrick E., Di Stefano, Luisa, Candeias, Rogerio, Nordman, Jared T., Orr-Weaver, Terry L.

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