The impact of violating the independence assumption in meta-analysis on biomarker discovery by Farnoosh Abbas-Aghababazadeh, Wei Xu, Wei Xu, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains

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Pathway-Based Drug Response Prediction Using Similarity Identification in Gene Expression by Seyed Ali Madani Tonekaboni, Seyed Ali Madani Tonekaboni, Gangesh Beri, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains, Benjamin Haibe-Kains

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Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations by Seyed Ali Madani Tonekaboni, Benjamin Haibe-Kains, Mathieu Lupien

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Novel subtypes of NPM1-mutated AML with distinct outcome by Arvind Singh Mer, Mark D. Minden, Benjamin Haibe-Kains, Aaron D. Schimmer

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Study of Meta-analysis strategies for network inference using information-theoretic approaches by Ngoc C. Pham, Benjamin Haibe-Kains, Pau Bellot, Gianluca Bontempi, Patrick E. Meyer

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Spatial transformation of multi-omics data unlocks novel insights into cancer biology by Mateo Sokač, Asbjørn Kjær, Lars Dyrskjøt, Benjamin Haibe-Kains, Hugo JWL Aerts, Nicolai J Birkbak

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A Comparative Study of Cluster Detection Algorithms in Protein–Protein Interaction for Drug Target Discovery and Drug Repurposing by Jun Ma, Jun Ma, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Benjamin Haibe-Kains, Penggao Dai

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Orchestrating a community-developed computational workshop and accompanying training materials [version 1; referees: 2 approved] by Sean Davis, Marcel Ramos, Lori Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron

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Using shRNA experiments to validate gene regulatory networks by Catharina Olsen, Kathleen Fleming, Niall Prendergast, Renee Rubio, Frank Emmert-Streib, Gianluca Bontempi, John Quackenbush, Benjamin Haibe-Kains

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P745: High-fidelity whole genome sequencing of FFPE tumor-derived nucleic acids stored at ambient temperature by Farnoosh Abbas-Aghababazadeh, Lee Organick, Michael Blas, Benjamin Haibe-Kains, James Banal, Celeste Yu, Philippe Bedard, Heather Williams

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Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status. by Qiyuan Li, Aron C Eklund, Nicolai Juul, Benjamin Haibe-Kains, Christopher T Workman, Andrea L Richardson, Zoltan Szallasi, Charles Swanton

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Automated detection of dental artifacts for large-scale radiomic analysis in radiation oncology by Colin Arrowsmith, Reza Reiazi, Mattea L. Welch, Michal Kazmierski, Tirth Patel, Aria Rezaie, Tony Tadic, Scott Bratman, Benjamin Haibe-Kains

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Prediction of Human Papillomavirus (HPV) Association of Oropharyngeal Cancer (OPC) Using Radiomics: The Impact of the Variation of CT Scanner by Reza Reiazi, Colin Arrowsmith, Mattea Welch, Farnoosh Abbas-Aghababazadeh, Christopher Eeles, Tony Tadic, Andrew J. Hope, Scott V. Bratman, Benjamin Haibe-Kains

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Heterogeneity in leukemia cells that escape drug-induced senescence-like state by David Miller, Kyra Kerkhofs, Farnoosh Abbas-Aghababazadeh, Sahib Singh Madahar, Mark D. Minden, Josée Hébert, Benjamin Haibe-Kains, Mark A. Bayfield, Samuel Benchimol

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Author Correction: Gene isoforms as expression-based biomarkers predictive of drug response in vitro by Zhaleh Safikhani, Petr Smirnov, Kelsie L. Thu, Jennifer Silvester, Nehme El-Hachem, Rene Quevedo, Mathieu Lupien, Tak W. Mak, David Cescon, Benjamin Haibe-Kains

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Significance analysis of prognostic signatures. by Andrew H Beck, Nicholas W Knoblauch, Marco M Hefti, Jennifer Kaplan, Stuart J Schnitt, Aedin C Culhane, Markus S Schroeder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains

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Low CD10 mRNA expression identifies high-risk ductal carcinoma in situ (DCIS). by Jérôme Toussaint, Virginie Durbecq, Sevilay Altintas, Valérie Doriath, Ghizlane Rouas, Marianne Paesmans, Philippe Bedard, Benjamin Haibe-Kains, Wiebren A Tjalma, Denis Larsimont, Martine Piccart, Christos Sotiriou

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Evaluation of statistical approaches for association testing in noisy drug screening data by Petr Smirnov, Ian Smith, Zhaleh Safikhani, Wail Ba-alawi, Farnoosh Khodakarami, Eva Lin, Yihong Yu, Scott Martin, Janosch Ortmann, Tero Aittokallio, Marc Hafner, Benjamin Haibe-Kains

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Global microRNA expression profiling identifies MiR-210 associated with tumor proliferation, invasion and poor clinical outcome in breast cancer. by Françoise Rothé, Michail Ignatiadis, Carole Chaboteaux, Benjamin Haibe-Kains, Naïma Kheddoumi, Samira Majjaj, Bassam Badran, Hussein Fayyad-Kazan, Christine Desmedt, Adrian L Harris, Martine Piccart, Christos Sotiriou

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Long-term In Vitro Treatment of Human Glioblastoma Cells with Temozolomide Increases Resistance In Vivo through Up-regulation of GLUT Transporter and Aldo-Keto Reductase Enzyme AKR... by Benjamin Le Calvé, Michal Rynkowski, Marie Le Mercier, Céline Bruyère, Caroline Lonez, Thierry Gras, Benjamin Haibe-Kains, Gianluca Bontempi, Christine Decaestecker, Jean-Marie Ruysschaert, Robert Kiss, Florence Lefranc

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