Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. by Raghwani, J, Rambaut, A, Holmes, E, Hang, V, Hien, T, Farrar, J, Wills, B, Lennon, N, Birren, B, Henn, MR, Simmons, C

The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults. by Hoang, LT, Lynn, D, Henn, M, Birren, B, Lennon, N, Le, P, Duong, K, Nguyen, T, Mai, L, Farrar, J, Hibberd, M, Simmons, C

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance in western Thailand by Cerqueira, G, Cheeseman, I, Schaffner, S, Nair, S, McDew-White, M, Phyo, A, Ashley, E, Melnikov, A, Rogov, P, Birren, B, Nosten, F, Anderson, T, Neafsey, D

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia by Duong, V, Simmons, C, Gavotte, L, Viari, A, Ong, S, Chantha, N, Lennon, N, Birren, B, Vong, S, Farrar, J, Henn, M, Deubel, V, Frutos, R, Buchy, P

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia by Duong, V, Simmons, C, Gavotte, L, Viari, A, Ong, S, Chantha, N, Lennon, N, Birren, B, Vong, S, Farrar, J, Henn, MR, Deubel, V, Frutos, R, Buchy, P

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia. by Duong, V, Simmons, C, Gavotte, L, Viari, A, Ong, S, Chantha, N, Lennon, N, Birren, B, Vong, S, Farrar, J, Henn, MR, Deubel, V, Frutos, R, Buchy, P

Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia. by Vu, T, Holmes, E, Duong, V, Nguyen, T, Tran, T, Quail, M, Churcher, C, Parkhill, J, Cardosa, J, Farrar, J, Wills, B, Lennon, N, Birren, B, Buchy, P, Henn, MR, Simmons, C

Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters by Duong, V, Henn, M, Simmons, C, Ngan, C, Y, B, Gavotte, L, Viari, A, Ong, S, Huy, R, Lennon, N, Ly, S, Vong, S, Birren, B, Farrar, J, Deubel, V, Frutos, R, Buchy, P

Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters. by Duong, V, Henn, MR, Simmons, C, Ngan, C, Y, B, Gavotte, L, Viari, A, Ong, S, Huy, R, Lennon, N, Ly, S, Vong, S, Birren, B, Farrar, J, Deubel, V, Frutos, R, Buchy, P

Emergence of the Asian 1 genotype of dengue Virus serotype 2 in viet Nam: in vivo fitness advantage and lineage replacement in South-East Asia by Hang, V, Holmes, E, Veasna, D, Quy, N, Hien, T, Quail, M, Churcher, C, Parkhill, J, Cardosa, J, Farrar, J, Wills, B, Lennon, N, Birren, B, Buchy, P, Henn, MR, Simmons, C

High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections. by Thai, K, Henn, MR, Zody, M, Tricou, V, Nguyet, N, Charlebois, P, Lennon, N, Green, L, de Vries, P, Hien, T, Farrar, J, Van Doorn, H, Jong, d, Birren, B, Holmes, E, Simmons, C

High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections by Thai, K, Henn, M, Zody, M, Tricou, V, Nguyet, N, Charlebois, P, Lennon, N, Green, L, De Vries, P, Hien, T, Farrar, J, Van Doorn, H, De Jong, M, Birren, B, Holmes, E, Simmons, C

Mobile genes in the human microbiome are structured from global to individual scales by Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Wortman, J. R., Birren, B. W., Blainey, P. C., Singh, A. K., Gevers, D., Brito, Ilana Lauren, Smillie, Chris S, Alm, Eric J, Xavier, Ramnik Joseph

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Initial sequencing and comparative analysis of the mouse genome. by Waterston, R, Lindblad-Toh, K, Birney, E, Rogers, J, Abril, J, Agarwal, P, Agarwala, R, Ainscough, R, Alexandersson, M, An, P, Antonarakis, SE, Attwood, J, Baertsch, R, Bailey, J, Barlow, K, Beck, S, Berry, E, Birren, B, Bloom, T, Bork, P, Botcherby, M, Bray, N, Brent, MR, Brown, D, Brown, S

Initial sequencing and analysis of the human genome. by Lander, E, Linton, L, Birren, B, Nusbaum, C, Zody, M, Baldwin, J, Devon, K, Dewar, K, Doyle, M, FitzHugh, W, Funke, R, Gage, D, Harris, K, Heaford, A, Howland, J, Kann, L, Lehoczky, J, LeVine, R, McEwan, P, McKernan, K, Meldrim, J, Mesirov, J, Miranda, C, Morris, W, Naylor, J

A phylogenetic analysis using full-length viral genomes of South American dengue serotype 3 in consecutive Venezuelan outbreaks reveals a novel NS5 mutation by Camacho, D., Comach, G., Xhaja, K., Rizzolo, K., de Bosch, N., Becerra, A., Mondini, A., Ocazionez, R., Bosch, Irene, Gehrke, Lee, Schmidt, D. J., Pickett, B. E., Lennon, N. J., Nogueira, Mauricio Lacerda, da Silva, E. V., Vasconcelos, P. F., Munoz-Jordan, J. L., Santiago, G. A., Lefkowitz, E. J., Birren, B. W., Henn, M. R.

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A comparative genomics multitool for scientific discovery and conservation by Genereux, DP, Serres, A, Armstrong, J, Johnson, J, Marinescu, VD, Muren, E, Juan, D, Bejerano, G, Casewell, NR, Chemnick, LG, Damas, J, Di Palma, F, Diekhans, M, Fiddes, IT, Garber, M, Gladyshev, NV, Goodman, L, Haerty, W, Houck, ML, Hubley, R, Kivioja, T, Koepfli, KP, Kuderna, LFK, Lander, Eric Steven, Meadows, JRS, Murphy, WJ, Nash, W, Noh, HJ, Nweeia, M, Pfenning, AR, Pollard, KS, Ray, DA, Shapiro, B, Smit, AFA, Springer, MS, Steiner, CC, Swofford, R, Taipale, J, Teeling, EC, Turner-Maier, J, Alfoldi, J, Birren, B, Ryder, OA, Lewin, HA, Paten, B, Marques-Bonet, T, Lindblad-Toh, K, Karlsson, EK

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