Major Histocompatibility Complex Binding, Eluted Ligands, and Immunogenicity: Benchmark Testing and Predictions by Sinu Paul, Alba Grifoni, Bjoern Peters, Bjoern Peters, Alessandro Sette, Alessandro Sette

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Estimating tissue-specific peptide abundance from public RNA-Seq data by Angela Frentzen, Jason A. Greenbaum, Haeuk Kim, Bjoern Peters, Bjoern Peters, Zeynep Koşaloğlu-Yalçın

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GOnet: a tool for interactive Gene Ontology analysis by Mikhail Pomaznoy, Brendan Ha, Bjoern Peters

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A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC. by Jason Bennett, Mikhail Pomaznoy, Akul Singhania, Bjoern Peters

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Analysis of Human RSV Immunity at the Molecular Level: Learning from the Past and Present. by Kerrie Vaughan, Julia Ponomarenko, Bjoern Peters, Alessandro Sette

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Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma by Véronique Schulten, Luise Westernberg, Giovanni Birrueta, John Sidney, Sinu Paul, Paula Busse, Bjoern Peters, Bjoern Peters, Alessandro Sette, Alessandro Sette

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Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis by Julie G. Burel, Mariana Babor, Mikhail Pomaznoy, Cecilia S. Lindestam Arlehamn, Nabeela Khan, Alessandro Sette, Alessandro Sette, Bjoern Peters, Bjoern Peters

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Positional bias of MHC class I restricted T-cell epitopes in viral antigens is likely due to a bias in conservation. by Yohan Kim, Jonathan W Yewdell, Alessandro Sette, Bjoern Peters

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Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands by Sinu Paul, Edita Karosiene, Sandeep Kumar Dhanda, Vanessa Jurtz, Lindy Edwards, Morten Nielsen, Morten Nielsen, Alessandro Sette, Alessandro Sette, Bjoern Peters, Bjoern Peters

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Classification of the universe of immune epitope literature: representation and knowledge gaps. by Vince Davies, Kerrie Vaughan, Rohini Damle, Bjoern Peters, Alessandro Sette

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The role of antigen expression in shaping the repertoire of HLA presented ligands by Heli M. Garcia Alvarez, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, Morten Nielsen

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A meta-analysis of the existing knowledge of immunoreactivity against hepatitis C virus (HCV). by Yohan Kim, Kerrie Vaughan, Jason Greenbaum, Bjoern Peters, Mansun Law, Alessandro Sette

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Putting benchmarks in their rightful place: The heart of computational biology. by Bjoern Peters, Steven E Brenner, Edwin Wang, Donna Slonim, Maricel G Kann

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Predicting HLA CD4 Immunogenicity in Human Populations by Sandeep Kumar Dhanda, Edita Karosiene, Lindy Edwards, Alba Grifoni, Sinu Paul, Massimo Andreatta, Daniela Weiskopf, John Sidney, Morten Nielsen, Morten Nielsen, Bjoern Peters, Bjoern Peters, Alessandro Sette, Alessandro Sette

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Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database by Swapnil Mahajan, Randi Vita, Deborah Shackelford, Jerome Lane, Veronique Schulten, Laura Zarebski, Martin Closter Jespersen, Paolo Marcatili, Morten Nielsen, Morten Nielsen, Alessandro Sette, Alessandro Sette, Bjoern Peters, Bjoern Peters

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TiArA: a virtual appliance for the analysis of Tiling Array data. by Jason A Greenbaum, Erika Assarsson, Jo L Chung, Steven Head, Alessandro Sette, Bjoern Peters

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Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow’s Milk-Containing Food Extracts by Meng Chen, Aaron Sutherland, Giovanni Birrueta, Susan Laubach, Stephanie Leonard, Bjoern Peters, Véronique Schulten

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Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes by Sinu Paul, Cecilia S. Lindestam Arlehamn, Veronique Schulten, Luise Westernberg, John Sidney, Bjoern Peters, Alessandro Sette

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Urinary Peptides As a Novel Source of T Cell Allergen Epitopes by Ricardo da Silva Antunes, John Pham, Curtis McMurtrey, William H. Hildebrand, Elizabeth Phillips, Elizabeth Phillips, Simon Mallal, Simon Mallal, John Sidney, Paula Busse, Bjoern Peters, Bjoern Peters, Véronique Schulten, Alessandro Sette, Alessandro Sette

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Footprints of antigen processing boost MHC class II natural ligand predictions by Carolina Barra, Bruno Alvarez, Sinu Paul, Alessandro Sette, Bjoern Peters, Massimo Andreatta, Søren Buus, Morten Nielsen

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