Missing data in multi-omics integration: Recent advances through artificial intelligence by Javier E. Flores, Daniel M. Claborne, Zachary D. Weller, Bobbie-Jo M. Webb-Robertson, Katrina M. Waters, Lisa M. Bramer

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Characterizing Families of Spectral Similarity Scores and Their Use Cases for Gas Chromatography–Mass Spectrometry Small Molecule Identification by David J. Degnan, Javier E. Flores, Eva R. Brayfindley, Vanessa L. Paurus, Bobbie-Jo M. Webb-Robertson, Chaevien S. Clendinen, Lisa M. Bramer

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From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions by Melanie T. Odenkirk, Kelly G. Stratton, Lisa M. Bramer, Bobbie-Jo M. Webb-Robertson, Kent J. Bloodsworth, Matthew E. Monroe, Kristin E. Burnum-Johnson, Erin S. Baker

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Sequential projection pursuit principal component analysis – dealing with missing data associated with new -omics technologies by Bobbie-Jo M. Webb-Robertson, Melissa M. Matzke, Thomas O. Metz, Jason E. McDermott, Hyunjoo Walker, Karin D. Rodland, Joel G. Pounds, Katrina M. Waters

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Data from a multi-year targeted proteomics study of a longitudinal birth cohort of type 1 diabetes by Lisa M. Bramer, Ernesto S. Nakayasu, Javier E. Flores, Jennifer E. Van Eyk, Michael J. MacCoss, Hemang M. Parikh, Thomas O. Metz, Bobbie-Jo M. Webb-Robertson

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From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem by Lily Khadempour, Jennifer E. Kyle, Bobbie-Jo M. Webb-Robertson, Carrie D. Nicora, Francesca B. Smith, Richard D. Smith, Mary S. Lipton, Cameron R. Currie, Erin S. Baker, Kristin E. Burnum-Johnson

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Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images. by Marjolein Oostrom, Michael A Muniak, Rogene M Eichler West, Sarah Akers, Paritosh Pande, Moses Obiri, Wei Wang, Kasey Bowyer, Zhuhao Wu, Lisa M Bramer, Tianyi Mao, Bobbie Jo M Webb-Robertson

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Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts by Samuel T. Coradetti, Paul A. Adamczyk, Di Liu, Yuqian Gao, Peter B. Otoupal, Gina M. Geiselman, Bobbie-Jo M. Webb-Robertson, Meagan C. Burnet, Young-Mo Kim, Kristin E. Burnum-Johnson, Jon Magnuson, John M. Gladden

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Interrogating the role of the milk microbiome in mastitis in the multi-omics era by Sneha P. Couvillion, Katie E. Mostoller, Janet E. Williams, Ryan M. Pace, Izabel L. Stohel, Haley K. Peterson, Carrie D. Nicora, Ernesto S. Nakayasu, Bobbie-Jo M. Webb-Robertson, Mark A. McGuire, Michelle K. McGuire, Thomas O. Metz

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Decrease in multiple complement proteins associated with development of islet autoimmunity and type 1 diabetes by Bobbie-Jo M. Webb-Robertson, Ernesto S. Nakayasu, Fran Dong, Kathy C. Waugh, Javier E. Flores, Lisa M. Bramer, Athena A. Schepmoes, Yuqian Gao, Thomas L. Fillmore, Suna Onengut-Gumuscu, Ashley Frazer-Abel, Stephen S. Rich, V. Michael Holers, Thomas O. Metz, Marian J. Rewers

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Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus by Kyle R. Pomraning, Ziyu Dai, Nathalie Munoz, Young-Mo Kim, Yuqian Gao, Shuang Deng, Teresa Lemmon, Marie S. Swita, Jeremy D. Zucker, Joonhoon Kim, Stephen J. Mondo, Ellen Panisko, Meagan C. Burnet, Bobbie-Jo M. Webb-Robertson, Beth Hofstad, Scott E. Baker, Kristin E. Burnum-Johnson, Jon K. Magnuson

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Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass by James Kirby, Gina M. Geiselman, Junko Yaegashi, Joonhoon Kim, Xun Zhuang, Mary Bao Tran-Gyamfi, Jan-Philip Prahl, Eric R. Sundstrom, Yuqian Gao, Nathalie Munoz, Kristin E. Burnum-Johnson, Veronica T. Benites, Edward E. K. Baidoo, Anna Fuhrmann, Katharina Seibel, Bobbie-Jo M. Webb-Robertson, Jeremy Zucker, Carrie D. Nicora, Deepti Tanjore, Jon K. Magnuson, Jeffrey M. Skerker, John M. Gladden

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Regulation of β-cell death by ADP-ribosylhydrolase ARH3 via lipid signaling in insulitis by Soumyadeep Sarkar, Cailin Deiter, Jennifer E. Kyle, Michelle A. Guney, Dylan Sarbaugh, Ruichuan Yin, Xiangtang Li, Yi Cui, Mireia Ramos-Rodriguez, Carrie D. Nicora, Farooq Syed, Jonas Juan-Mateu, Charanya Muralidharan, Lorenzo Pasquali, Carmella Evans-Molina, Decio L. Eizirik, Bobbie-Jo M. Webb-Robertson, Kristin Burnum-Johnson, Galya Orr, Julia Laskin, Thomas O. Metz, Raghavendra G. Mirmira, Lori Sussel, Charles Ansong, Ernesto S. Nakayasu

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A genomic data archive from the Network for Pancreatic Organ donors with Diabetes by Daniel J. Perry, Melanie R. Shapiro, Sonya W. Chamberlain, Irina Kusmartseva, Srikar Chamala, Leandro Balzano-Nogueira, Mingder Yang, Jason O. Brant, Maigan Brusko, MacKenzie D. Williams, Kieran M. McGrail, James McNichols, Leeana D. Peters, Amanda L. Posgai, John S. Kaddis, Clayton E. Mathews, Clive H. Wasserfall, Bobbie-Jo M. Webb-Robertson, Martha Campbell-Thompson, Desmond Schatz, Carmella Evans-Molina, Alberto Pugliese, Patrick Concannon, Mark S. Anderson, Michael S. German, Chester E. Chamberlain, Mark A. Atkinson, Todd M. Brusko

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A compendium of multi-omics data illuminating host responses to lethal human virus infections by Amie J. Eisfeld, Lindsey N. Anderson, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff Smith, Larissa B. Thackray, Qing Tan, Amy C. Sims, Vineet D. Menachery, Alexandra Schäfer, Timothy P. Sheahan, Adam S. Cockrell, Kelly G. Stratton, Bobbie-Jo M. Webb-Robertson, Jennifer E. Kyle, Kristin E. Burnum-Johnson, Young-Mo Kim, Carrie D. Nicora, Zuleyma Peralta, Alhaji U. N’jai, Foday Sahr, Harm van Bakel, Michael S. Diamond, Ralph S. Baric, Thomas O. Metz, Richard D. Smith, Yoshihiro Kawaoka, Katrina M. Waters

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Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection by Praveen-Kumar Raj-Kumar, Xiaoying Lin, Tao Liu, Lori A. Sturtz, Marina A. Gritsenko, Vladislav A. Petyuk, Tyler J. Sagendorf, Brenda Deyarmin, Jianfang Liu, Anupama Praveen-Kumar, Guisong Wang, Jason E. McDermott, Anil K. Shukla, Ronald J. Moore, Matthew E. Monroe, Bobbie-Jo M. Webb-Robertson, Jeffrey A. Hooke, Leigh Fantacone-Campbell, Brad Mostoller, Leonid Kvecher, Jennifer Kane, Jennifer Melley, Stella Somiari, Patrick Soon-Shiong, Richard D. Smith, Richard J. Mural, Karin D. Rodland, Craig D. Shriver, Albert J. Kovatich, Hai Hu

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