The ethics of instantaneous contact tracing using mobile phone apps in the control of the COVID-19 pandemic by Parker, M, Fraser, C, Abeler-Dörner, L, Bonsall, D

Deep sequencing of hepatitis B virus (HBV) genomes using rolling circle amplification and Nanopore by Mcnaughton, A, Bonsall, D, De Cesare, M, Parks, D, Brown, A, Bowden, R, Barnes, E, Matthews, P

PHYLOSCANNER: Inferring transmission from within- and petween-host pathogen genetic diversity. by Wymant, C, Hall, M, Ratmann, O, Bonsall, D, Golubchik, T, de Cesare, M, Gall, A, Cornelissen, M, Fraser, C

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing by Ferretti, L, Wymant, C, Kendall, M, Zhao, L, Nurtay, A, Parker, M, Abeler-Dörner, L, Bonsall, D, Fraser, C

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse by Bonsall, D, Black, S, Howe, A, Chase, R, Ingravallo, P, Pak, I, Brown, A, Smith, D, Bowden, R, Barnes, E

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants. by English, S, Katzourakis, A, Bonsall, D, Flanagan, P, Duda, A, Fidler, S, Weber, J, McClure, M, Phillips, R, Frater, J

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens by Bowden, R, Bonsall, D, Ansari, M, Ip, C, Trebes, A, Brown, A, Klenerman, P, Buck, D, Piazza, P, Barnes, E

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA by Zhao, L, Hall, M, de Cesare, M, MacIntyre-Cockett, G, Lythgoe, K, Fraser, C, Bonsall, D, Golubchik, T, Ferretti, L

Epidemiological changes on the Isle of Wight after the launch of the NHS Test and Trace programme: a preliminary analysis by Kendall, M, Milsom, L, Abeler-Dörner, L, Wymant, C, Ferretti, L, Briers, M, Holmes, C, Bonsall, D, Abeler, J, Fraser, C

Characterisation of hepatitis C virus recombination in Cameroon using non-specific next generation sequencing. by Iles, J, Njouom, R, Foupouapouognigni, Y, Bonsall, D, Bowden, R, Trebes, A, Piazza, P, Barnes, E, Pépin, J, Klenerman, P, Pybus, O

detection and characterization of homologues of human hepatitis viruses and pegiviruses in rodents and bats in Vietnam by Van Nguyen, D, Van Nguyen, C, Bonsall, D, Ngo, T, Carrique-Mas, J, Pham, A, Bryant, J, Thwaites, G, Baker, S, Woolhouse, M, Simmonds, P

Prolonged Zika virus RNA detection in semen of immunosuppressed patient by Petridou, C, Bonsall, D, Ahmed, A, Roberts, M, Bell, C, De Cesare, M, Bowden, R, Graham, V, Bailey, D, Simpson, A, Aarons, E

Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes by Ip, C, Ansari, M, Brown, A, Bowden, R, Bonsall, D, Hudson, E, Klenerman, P, Piazza, P, Trebes, A, Barnes, E, Simmonds, P, STOP-HCV Consortium

Time to evaluate COVID-19 contact-tracing apps by Colizza, V, Grill, E, Mikolajczyk, R, Cattuto, C, Kucharski, A, Riley, S, Kendall, M, Lythgoe, K, Bonsall, D, Wymant, C, Abeler-Dörner, L, Ferretti, L, Fraser, C

HIV transmission dynamics and population-wide drug resistance in rural South Africa by Kemp, SA, Kamelian, K, Cuadros, DF, Cheng, MTK, Okango, E, Hanekom, W, Ndung’u, T, Pillay, D, Bonsall, D, Wong, EB, Tanser, F, Siedner, MJ, Gupta, RK

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors by Smith, D, Magri, A, Bonsall, D, Ip, C, Trebes, A, Brown, A, Piazza, P, Bowden, R, Nguyen, D, STOP-HCV Consortium, Ansari, M, Simmonds, P, Barnes, E

B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection by Huang, K, Bonsall, D, Katzourakis, A, Thomson, E, Fidler, S, Main, J, Muir, D, Weber, J, Frater, A, Phillips, R, Pybus, O, Goulder, P, McClure, M, Cooke, G, Klenerman, P

First complete genome sequences of Zika Virus isolated from febrile patient sera in Ecuador. by Márquez, S, Carrera, J, Pullan, S, Lewandowski, K, Paz, V, Loman, N, Quick, J, Bonsall, D, Powell, R, Thézé, J, Pybus, O, Klenerman, P, Eisenberg, J, Coloma, J, Carroll, M, Trueba, G, Logue, C

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV) by McNaughton, AL, Roberts, HE, Bonsall, D, De Cesare, M, Mokaya, J, Lumley, SF, Golubchik, T, Piazza, P, Martin, J, De Lara, C, Brown, A, Ansari, MA, Bowden, R, Barnes, E, Matthews, P

Simultaneous viral whole-genome sequencing and differential expression profiling in respiratory syncytial virus infection of infants by Lin, G-L, Golubchik, T, Drysdale, S, O'Connor, D, Jefferies, K, Brown, A, de Cesare, M, Bonsall, D, Ansari, MA, Aerssens, J, Bont, L, Openshaw, P, Martinón-Torres, F, Bowden, R, Pollard, AJ