Evaluation of an Open Source Registration Package for Automatic Contour Propagation in Online Adaptive Intensity-Modulated Proton Therapy of Prostate Cancer by Yuchuan Qiao, Thyrza Jagt, Mischa Hoogeman, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Marius Staring, Marius Staring, Marius Staring

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Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease by Arlin Keo, Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen van der Grond, Willeke M. C. van Roon-Mom, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Marcel J. T. Reinders, Ahmed Mahfouz, Ahmed Mahfouz

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Hierarchical Prediction of Registration Misalignment Using a Convolutional LSTM: Application to Chest CT Scans by Hessam Sokooti, Sahar Yousefi, Mohamed S. Elmahdy, Boudewijn P. F. Lelieveldt, Marius Staring

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Segmentation and visual analysis of whole-body mouse skeleton microSPECT. by Artem Khmelinskii, Harald C Groen, Martin Baiker, Marion de Jong, Boudewijn P F Lelieveldt

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Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry by Na Li, Vincent van Unen, Nannan Guo, Tamim Abdelaal, Tamim Abdelaal, Antonios Somarakis, Jeroen Eggermont, Ahmed Mahfouz, Susana M. Chuva de Sousa Lopes, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Frits Koning

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Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. by Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P F Lelieveldt, Jeroen de Ridder, Marcel Reinders

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A structural equation model for imaging genetics using spatial transcriptomics by Sjoerd M. H. Huisman, Ahmed Mahfouz, Nematollah K. Batmanghelich, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, for the Alzheimer’s Disease Neuroimaging Initiative

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Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study by Evgeni Aizenberg, Rosaline van den Berg, Zineb Ez-Zaitouni, Désirée van der Heijde, Monique Reijnierse, Oleh Dzyubachyk, Boudewijn P.F. Lelieveldt

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MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion by Inge A. Mulder, Artem Khmelinskii, Artem Khmelinskii, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Marieke J. H. Wermer, Mathias Hoehn, Mathias Hoehn, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg, Arn M. J. M. van den Maagdenberg

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Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types by Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel J. T. Reinders, Elmar Eisemann, Frits Koning, Anna Vilanova, Boudewijn P. F. Lelieveldt

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Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus. by Sandra Laban, Jessica S Suwandi, Vincent van Unen, Jos Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P F Lelieveldt, Bart O Roep

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Quantification of aortic pulse wave velocity from a population based cohort: a fully automatic method by Rahil Shahzad, Arun Shankar, Raquel Amier, Robin Nijveldt, Jos J. M. Westenberg, Albert de Roos, Boudewijn P. F. Lelieveldt, Rob J. van der Geest, on behalf of the Heart Brain Connection study group

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An Adaptive Intelligence Algorithm for Undersampled Knee MRI Reconstruction by Nicola Pezzotti, Sahar Yousefi, Mohamed S. Elmahdy, Jeroen Hendrikus Fransiscus Van Gemert, Christophe Schuelke, Mariya Doneva, Tim Nielsen, Sergey Kastryulin, Boudewijn P. F. Lelieveldt, Matthias J. P. Van Osch, Elwin De Weerdt, Marius Staring

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Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease by Vincent van Unen, Vincent van Unen, Laura F. Ouboter, Laura F. Ouboter, Na Li, Mette Schreurs, Tamim Abdelaal, Tamim Abdelaal, Yvonne Kooy-Winkelaar, Guillaume Beyrend, Thomas Höllt, Thomas Höllt, P. W. Jeroen Maljaars, M. Luisa Mearin, Ahmed Mahfouz, Ahmed Mahfouz, Ahmed Mahfouz, Anne M. C. Witte, Cornelis H. M. Clemens, Sunje Abraham, Johanna C. Escher, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, M. Fernanda Pascutti, Andrea E. van der Meulen – de Jong, Frits Koning

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Iron loading is a prominent feature of activated microglia in Alzheimer’s disease patients by Boyd Kenkhuis, Antonios Somarakis, Lorraine de Haan, Oleh Dzyubachyk, Marieke E. IJsselsteijn, Noel F. C. C. de Miranda, Boudewijn P. F. Lelieveldt, Jouke Dijkstra, Willeke M. C. van Roon-Mom, Thomas Höllt, Louise van der Weerd

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Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry by Zheng Li, Frits Koning, Natasja L de Vries, Tamim Abdelaal, Boudewijn P F Lelieveldt, Noel F C C de Miranda, Hans Morreau, Dina Ruano, Alexander L Vahrmeijer, Bert A Bonsing, Thomas P Brouwer, Ricki T Krog, Arantza Fariña

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Interactive local super-resolution reconstruction of whole-body MRI mouse data: a pilot study with applications to bone and kidney metastases. by Oleh Dzyubachyk, Artem Khmelinskii, Esben Plenge, Peter Kok, Thomas J A Snoeks, Dirk H J Poot, Clemens W G M Löwik, Charl P Botha, Wiro J Niessen, Louise van der Weerd, Erik Meijering, Boudewijn P F Lelieveldt

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Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy by Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A. C. t’ Hoen, Jos G. M. Hendriksen, Annemieke M. Aartsma-Rus, Jan J. G. M. Verschuuren, Erik H. Niks, Marcel J. T. Reinders, Hermien E. Kan, Boudewijn P. F. Lelieveldt

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Eleven grand challenges in single-cell data science by David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R. Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P.F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Alicja Rączkowska, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

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