PELOTA and HBS1 suppress co‐translational messenger RNA decay in Arabidopsis Bằng Rong Guo, Brian D. Gregory

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The identification of conserved sequence features of co‐translationally decayed mRNAs and upstream open reading frames in angiosperm transcriptomes Bằng Rong Guo, Xiang Yu, Brian D. Gregory

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RNA N⁶-Methyladenosine Affects Copper-Induced Oxidative Stress Response in <i>Arabidopsis thaliana</i> Bằng Bishwas Sharma, Ganesan Govindan, Yongfang Li, Ramanjulu Sunkar, Brian D. Gregory

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Chromatin dynamics during the differentiation of long-term hematopoietic stem cells to multipotent progenitors Bằng Xiang Yu, Chao Wu, Dheeraj Bhavanasi, Hong Wang, Brian D. Gregory, Jian Huang

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Global Analysis of RNA-Dependent RNA Polymerase-Dependent Small RNAs Reveals New Substrates and Functions for These Proteins and SGS3 in Arabidopsis Bằng Xia Hua, Nathan D. Berkowitz, Matthew R. Willmann, Xiang Yu, Eric Lyons, Brian D. Gregory

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Analysis of the host transcriptome from demyelinating spinal cord of murine coronavirus-infected mice. Bằng Ruth Elliott, Fan Li, Isabelle Dragomir, Ming Ming W Chua, Brian D Gregory, Susan R Weiss

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Comparative analyses suggest a link between mRNA splicing, stability, and RNA covalent modifications in flowering plants Bằng Kyle Palos, Anna C. Nelson Dittrich, Eric H. Lyons, Brian D. Gregory, Andrew D. L. Nelson

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HiPR: High-throughput probabilistic RNA structure inference Bằng Pavel P. Kuksa, Fan Li, Sampath Kannan, Brian D. Gregory, Yuk Yee Leung, Li-San Wang

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A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, lncCOBRA1, Affects Arabidopsis Germination and Development Bằng Marianne C. Kramer, Marianne C. Kramer, Hee Jong Kim, Hee Jong Kim, Hee Jong Kim, Kyle R. Palos, Benjamin A. Garcia, Benjamin A. Garcia, Eric Lyons, Eric Lyons, Mark A. Beilstein, Andrew D. L. Nelson, Brian D. Gregory, Brian D. Gregory

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Dicer-2 processes diverse viral RNA species. Bằng Leah R Sabin, Qi Zheng, Pramod Thekkat, Jamie Yang, Gregory J Hannon, Brian D Gregory, Matthew Tudor, Sara Cherry

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Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. Bằng Qi Zheng, Paul Ryvkin, Fan Li, Isabelle Dragomir, Otto Valladares, Jamie Yang, Kajia Cao, Li-San Wang, Brian D Gregory

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Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development. Bằng Seth D Kasowitz, Jun Ma, Stephen J Anderson, N Adrian Leu, Yang Xu, Brian D Gregory, Richard M Schultz, P Jeremy Wang

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Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing Bằng You Wu, Wenna Shao, Mengxiao Yan, Yuqin Wang, Pengfei Xu, Guoqiang Huang, Xiaofei Li, Brian D. Gregory, Jun Yang, Hongxia Wang, Xiang Yu

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Essential Role for endogenous siRNAs during meiosis in mouse oocytes. Bằng Paula Stein, Nikolay V Rozhkov, Fan Li, Fabián L Cárdenas, Olga Davydenko, Lee E Vandivier, Brian D Gregory, Gregory J Hannon, Richard M Schultz

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Paternal poly (ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression. Bằng Motomasa Ihara, Mirella L Meyer-Ficca, N Adrian Leu, Shilpa Rao, Fan Li, Brian D Gregory, Irina A Zalenskaya, Richard M Schultz, Ralph G Meyer

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N6‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis Bằng Marianne C. Kramer, Kevin A. Janssen, Kyle Palos, Andrew D. L. Nelson, Lee E. Vandivier, Benjamin A. Garcia, Eric Lyons, Mark A. Beilstein, Brian D. Gregory

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Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing. Bằng Matthew W Endres, Brian D Gregory, Zhihuan Gao, Amy Wahba Foreman, Sizolwenkosi Mlotshwa, Xin Ge, Gail J Pruss, Joseph R Ecker, Lewis H Bowman, Vicki Vance

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Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency Bằng Taolan Zhao, Qing Huan, Jing Sun, Chunyan Liu, Xiuli Hou, Xiang Yu, Ian M. Silverman, Yi Zhang, Brian D. Gregory, Chun-Ming Liu, Wenfeng Qian, Xiaofeng Cao

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PNPase knockout results in mtDNA loss and an altered metabolic gene expression program. Bằng Eriko Shimada, Fasih M Ahsan, Mahta Nili, Dian Huang, Sean Atamdede, Tara TeSlaa, Dana Case, Xiang Yu, Brian D Gregory, Benjamin J Perrin, Carla M Koehler, Michael A Teitell

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Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data Bằng Sateesh Peri, Sarah Roberts, Isabella R. Kreko, Lauren B. McHan, Alexandra Naron, Archana Ram, Rebecca L. Murphy, Eric Lyons, Eric Lyons, Brian D. Gregory, Upendra K. Devisetty, Andrew D. L. Nelson

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