Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis by Zare Habil, Haffari Gholamreza, Gupta Arvind, Brinkman Ryan R

flowClust: a Bioconductor package for automated gating of flow cytometry data by Lo Kenneth, Hahne Florian, Brinkman Ryan R, Gottardo Raphael

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OntoFox: web-based support for ontology reuse by Courtot Mélanie, Xiang Zuoshuang, Brinkman Ryan R, Ruttenberg Alan, He Yongqun

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flowCore: a Bioconductor package for high throughput flow cytometry by Spidlen Josef, Sarkar Deepayan, Haaland Perry, Ellis Byron, Brinkman Ryan R, LeMeur Nolwenn, Hahne Florian, Strain Errol, Gentleman Robert

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FuGEFlow: data model and markup language for flow cytometry by Manion Frank J, Jones Andrew R, Gasparetto Maura, Wilkinson Peter, Spidlen Josef, Tchuvatkina Olga, Qian Yu, Scheuermann Richard H, Sekaly Rafick-Pierre, Brinkman Ryan R

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GenePattern flow cytometry suite by Spidlen, Josef, Barsky, Aaron, Breuer, Karin, Carr, Peter, Nazaire, Marc-Danie, Hill, Barbara, Qian, Yu, Liefeld, Ted, Reich, Michael, Wilkinson, Peter, Scheuermann, Richard H., Sekaly, Rafick-Pierre, Brinkman, Ryan R., Mesirov, Jill P.

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Modeling biomedical experimental processes with OBI by Brinkman Ryan R, Courtot Mélanie, Derom Dirk, Fostel Jennifer M, He Yongqun, Lord Phillip, Malone James, Parkinson Helen, Peters Bjoern, Rocca-Serra Philippe, Ruttenberg Alan, Sansone Susanna-Assunta, Soldatova Larisa N, Stoeckert Christian J, Turner Jessica A, Zheng Jie