P09-09. Impact of immune-driven sequence variation in HIV-1 subtype C Gag-Protease on viral fitness and disease progression af Wright, J, Brockman, M, Brumme, Z, Walker, B, Goulder, P, Ndung'u, T

Impact of immune-driven sequence variation in HIV-1 subtype C Gag-Protease on viral fitness and disease progression af Wright, J, Brockman, M, Brumme, Z, Walker, B, Goulder, P, Ndung'u, T

Statistical resolution of ambiguous HLA typing data af Listgarten, J, Brumme, Z, Kadie, C, Walker, B, Carrington, M, Goulder, P, Heckerman, D

Statistical resolution of ambiguous HLA typing data af Listgarten, J, Brumme, Z, Kadie, C, Xiaojiang, G, Walker, B, Carrington, M, Goulder, P, Heckerman, D

A mutation in the 3' region of the human immunodeficiency virus type 1 reverse transcriptase (Y318F) associated with nonnucleoside reverse transcriptase inhibitor resistance. af Harrigan, P, Salim, M, Stammers, D, Wynhoven, B, Brumme, Z, McKenna, P, Larder, B, Kemp, S

IN SILICO RESOLUTION OF AMBIGUOUS HLA TYPING DATA. af Listgarten, J, Brumme, Z, Kadie, C, Xiaojiang, G, Walker, B, Carrington, M, Goulder, P, Heckerman, D

Impact of HLA-B*81-associated mutations in HIV-1 Gag on viral replication capacity. af Wright, J, Naidoo, V, Brumme, Z, Prince, J, Claiborne, D, Goulder, P, Brockman, M, Hunter, E, Ndung'u, T

P09-19 LB. CTL escape mutations in gag epitopes restricted by protective HLA class I alleles cause substantial reductions in viral replication capacity af Walker B, Kemper M, Kane K, Dudek T, Brumme C, Streeck H, Brockman M, Brumme Z, Schneidewind A, Boutwell CL, Altfeld M, Allen T

Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. af Carlson, J, Brumme, Z, Rousseau, C, Brumme, C, Matthews, P, Kadie, C, Mullins, J, Walker, B, Harrigan, P, Goulder, P, Heckerman, D

CTL Escape and Codon Covariation in Subtypes B and C p17 (Matrix) and p24 (Capsid) Proteins af Carlson, J, Brumme, Z, Rousseau, C, Brumme, C, Matthews, P, Kadie, C, Mullins, J, Walker, B, Harrigan, R, Goulder, P, Heckerman, D

Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individu... af Wright, J, Brumme, Z, Julg, B, van der Stok, M, Mncube, Z, Gao, X, Carlson, J, Goulder, P, Walker, B, Brockman, M, Ndung'u, T

Widespread impact of HLA restriction on immune control and escape pathways of HIV-1. af Carlson, J, Listgarten, J, Pfeifer, N, Tan, V, Kadie, C, Walker, B, Ndung'u, T, Shapiro, R, Frater, J, Brumme, Z, Goulder, P, Heckerman, D

Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B 2705-restricted CD8+ T cells. af Payne, R, Kløverpris, H, Sacha, J, Brumme, Z, Brumme, C, Buus, S, Sims, S, Hickling, S, Riddell, L, Chen, F, Luzzi, G, Edwards, A, Phillips, R, Prado, J, Goulder, P

Combined Clinical and Immunological Biomarkers Predict Rates of CD4 Decline in Chronic Untreated HIV Infection af Brumme, Z, Nair, K, Wang, B, van der Stok, M, Brumme, C, Bishop, K, Reddy, S, Mncube, Z, Chonco, F, Frahm, N, Goulder, P, Ndung'u, T, Freedberg, K, Losina, E, Walker, B

Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters. af Wright, J, Brumme, Z, Carlson, J, Heckerman, D, Kadie, C, Brumme, C, Wang, B, Losina, E, Miura, T, Chonco, F, van der Stok, M, Mncube, Z, Bishop, K, Goulder, P, Walker, B, Brockman, M, Ndung'u, T

Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. af Huang, K, Goedhals, D, Carlson, J, Brockman, M, Mishra, S, Brumme, Z, Hickling, S, Tang, C, Miura, T, Seebregts, C, Heckerman, D, Ndung'u, T, Walker, B, Klenerman, P, Steyn, D, Goulder, P, Phillips, R, van Vuuren, C, Frater, A

Influence of Gag-protease-mediated replication capacity on disease progression in individuals recently infected with HIV-1 subtype C. af Wright, J, Novitsky, V, Brockman, M, Brumme, Z, Brumme, C, Carlson, J, Heckerman, D, Wang, B, Losina, E, Leshwedi, M, van der Stok, M, Maphumulo, L, Mkhwanazi, N, Chonco, F, Goulder, P, Essex, M, Walker, B, Ndung'u, T

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes. af Mann, J, Byakwaga, H, Kuang, X, Le, A, Brumme, C, Mwimanzi, P, Omarjee, S, Martin, E, Lee, G, Baraki, B, Danroth, R, McCloskey, R, Muzoora, C, Bangsberg, DR, Hunt, P, Goulder, P, Walker, B, Harrigan, P, Martin, J, Ndung'u, T, Brockman, M, Brumme, Z

Adaptation of HIV-1 to human leukocyte antigen class I. af Kawashima, Y, Pfafferott, K, Frater, J, Matthews, P, Payne, R, Addo, M, Gatanaga, H, Fujiwara, M, Hachiya, A, Koizumi, H, Kuse, N, Oka, S, Duda, A, Prendergast, A, Crawford, H, Leslie, A, Brumme, Z, Brumme, C, Allen, T, Brander, C, Kaslow, R, Tang, J, Hunter, E, Allen, S, Mulenga, J

Differential escape patterns within the dominant HLA-B*57:03-restricted HIV Gag epitope reflect distinct clade-specific functional constraints. af Payne, R, Branch, S, Kløverpris, H, Matthews, P, Koofhethile, C, Strong, T, Adland, E, Leitman, E, Frater, J, Ndung'u, T, Hunter, E, Haubrich, R, Mothe, B, Edwards, A, Riddell, L, Chen, F, Harrigan, P, Brumme, Z, Mallal, S, John, M, Jooste, J, Shapiro, R, Deeks, S, Walker, B, Brander, C