Evolution of Protein Ductility in Duplicated Genes of Plants by Inmaculada Yruela, Inmaculada Yruela, Bruno Contreras-Moreira, Bruno Contreras-Moreira, Bruno Contreras-Moreira, A. Keith Dunker, Karl J. Niklas

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Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace by Bruno Contreras-Moreira, Bruno Contreras-Moreira, Carlos P. Cantalapiedra, María J. García-Pereira, María P. Gracia, Ernesto Igartua, Ana M. Casas

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Pan-genome association study of Mycobacterium tuberculosis lineage-4 revealed specific genes related to the high and low prevalence of the disease in patients from the North-Easter... by Uriel Hurtado-Páez, Nataly Álvarez Zuluaga, Rafael Eduardo Arango Isaza, Rafael Eduardo Arango Isaza, Bruno Contreras-Moreira, Bruno Contreras-Moreira, François Rouzaud, Jaime Robledo, Jaime Robledo

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Transcriptional Responses in root and leaf of Prunus persica Under Drought Stress Using RNA Sequencing by Najla Ksouri, Sergio Jiménez, Sergio Jiménez, Christina Elizabeth Wells, Bruno Contreras-Moreira, Yolanda Gogorcena

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K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes by Bruno Contreras‐Moreira, Carla V Filippi, Guy Naamati, Carlos García Girón, James E Allen, Paul Flicek

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Fine-tuning of the flowering time control in winter barley: the importance of HvOS2 and HvVRN2 in non-inductive conditions by Arantxa Monteagudo, Ernesto Igartua, Bruno Contreras-Moreira, M. Pilar Gracia, Javier Ramos, Ildikó Karsai, Ana M. Casas

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Unraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis by Daniela Medeot, Analía Sannazzaro, María Julia Estrella, Gonzalo Torres Tejerizo, Bruno Contreras-Moreira, Mariano Pistorio, Edgardo Jofré

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GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation by Bruno Contreras-Moreira, Shradha Saraf, Guy Naamati, Ana M. Casas, Sandeep S. Amberkar, Paul Flicek, Andrew R. Jones, Sarah Dyer

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Diversity of gene expression responses to light quality in barley by Álvaro Rodríguez del Río, Arantxa Monteagudo, Bruno Contreras-Moreira, Tibor Kiss, Marianna Mayer, Ildikó Karsai, Ernesto Igartua, Ana M. Casas

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A Cluster of Nucleotide-Binding Site–Leucine-Rich Repeat Genes Resides in a Barley Powdery Mildew Resistance Quantitative Trait Loci on 7HL by Carlos P. Cantalapiedra, Bruno Contreras-Moreira, Cristina Silvar, Dragan Perovic, Frank Ordon, María Pilar Gracia, Ernesto Igartua, Ana M. Casas

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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model <i>Brachypodium</i> Grasses by Maria Angeles Decena, Sergio Gálvez-Rojas, Federico Agostini, Ruben Sancho, Bruno Contreras-Moreira, David L. Des Marais, Pilar Hernandez, Pilar Catalán

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RSAT variation-tools: An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding by Walter Santana-Garcia, Maria Rocha-Acevedo, Lucia Ramirez-Navarro, Yvon Mbouamboua, Denis Thieffry, Morgane Thomas-Chollier, Bruno Contreras-Moreira, Jacques van Helden, Alejandra Medina-Rivera

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Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. by Zsolt Kelemen, Alvaro Sebastian, Wenjia Xu, Damaris Grain, Fabien Salsac, Alexandra Avon, Nathalie Berger, Joseph Tran, Bertrand Dubreucq, Claire Lurin, Loïc Lepiniec, Bruno Contreras-Moreira, Christian Dubos

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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 2; peer review: 2 approved] by Baron Koylass, Richard Finkers, Cyril Pommier, Guy Naamati, Timothee Cezard, Bruno Contreras-Moreira, Isuru Liyanage, Anne Fiebig, Stephan Weise, Paul J. Kersey, Sebastian Beier, Uwe Scholz, Matthias Lange, Mélanie Courtot, Sarah Dyer

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Candidate genes underlying QTL for flowering time and their interactions in a wide spring barley (Hordeum vulgare L.) cross by Ana M. Casas, Carlota R. Gazulla, Arantxa Monteagudo, Carlos P. Cantalapiedra, Marian Moralejo, M. Pilar Gracia, Francisco J. Ciudad, William T.B. Thomas, José L. Molina-Cano, Scott Boden, Bruno Contreras-Moreira, Ernesto Igartua

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A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat by Nikolai M Adamski, Philippa Borrill, Jemima Brinton, Sophie A Harrington, Clémence Marchal, Alison R Bentley, William D Bovill, Luigi Cattivelli, James Cockram, Bruno Contreras-Moreira, Brett Ford, Sreya Ghosh, Wendy Harwood, Keywan Hassani-Pak, Sadiye Hayta, Lee T Hickey, Kostya Kanyuka, Julie King, Marco Maccaferrri, Guy Naamati, Curtis J Pozniak, Ricardo H Ramirez-Gonzalez, Carolina Sansaloni, Ben Trevaskis, Luzie U Wingen, Brande BH Wulff, Cristobal Uauy

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure by Sean P. Gordon, Bruno Contreras-Moreira, Daniel P. Woods, David L. Des Marais, Diane Burgess, Shengqiang Shu, Christoph Stritt, Anne C. Roulin, Wendy Schackwitz, Ludmila Tyler, Joel Martin, Anna Lipzen, Niklas Dochy, Jeremy Phillips, Kerrie Barry, Koen Geuten, Hikmet Budak, Thomas E. Juenger, Richard Amasino, Ana L. Caicedo, David Goodstein, Patrick Davidson, Luis A. J. Mur, Melania Figueroa, Michael Freeling, Pilar Catalan, John P. Vogel

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors by Sean P. Gordon, Bruno Contreras-Moreira, Joshua J. Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S. Tartaglio, Adam Session, Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R. Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H. Doonan, Luis A. J. Mur, Chris Plott, Jerry Jenkins, Samuel P. Hazen, Scott J. Lee, Shengqiang Shu, David Goodstein, Daniel Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P. Vogel

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