An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis by Karamoko Niaré, Bryan Greenhouse, Jeffrey A. Bailey

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Review of MrsFreqPhase methods: methods designed to estimate statistically malaria parasite multiplicity of infection, relatedness, frequency and phase by Aimee R. Taylor, Eric Neubauer Vickers, Bryan Greenhouse

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Automated Recognition of Plasmodium falciparum Parasites from Portable Blood Levitation Imaging by Shreya S. Deshmukh, Oswald Byaruhanga, Patrick Tumwebaze, Demir Akin, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci

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Population structure and genetic connectivity of Plasmodium falciparum in pre-elimination settings of Southern Africa by Hazel B. Gwarinda, Sofonias K. Tessema, Jaishree Raman, Jaishree Raman, Bryan Greenhouse, Lyn-Marié Birkholtz

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91074 Identification of monoclonal antibodies with broad reactivity against the malaria parasite variant surface antigen responsible for severe malaria by Raphael Reyes, Louise Turner, Isaac Ssewanyana, John Rek, Bryan Greenhouse, Sebastiaan Bol, Thomas Lavstsen, Evelien M. Bunnik

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Differences in phenotype between long-lived memory B cells against Plasmodium falciparum merozoite antigens and variant surface antigens. by Raphael A Reyes, Louise Turner, Isaac Ssewanyana, Prasanna Jagannathan, Margaret E Feeney, Thomas Lavstsen, Bryan Greenhouse, Sebastiaan Bol, Evelien M Bunnik

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Author Correction: Population genomics of virulence genes of Plasmodium falciparum in clinical isolates from Uganda by Shazia Ruybal-Pesántez, Kathryn E. Tiedje, Gerry Tonkin-Hill, Thomas S. Rask, Moses R. Kamya, Bryan Greenhouse, Grant Dorsey, Michael F. Duffy, Karen P. Day

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Associations between antibodies to a panel of Plasmodium falciparum specific antigens and response to sub-optimal antimalarial therapy in Kampala, Uganda. by Chris E Keh, Aashish R Jha, Bridget Nzarubara, David E Lanar, Sheetij Dutta, Michael Theisen, Philip J Rosenthal, Grant Dorsey, Douglas F Nixon, Bryan Greenhouse

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Measures of malaria transmission, infection, and disease in an area bordering two districts with and without sustained indoor residual spraying of insecticide in Uganda. by Joaniter I Nankabirwa, Teun Bousema, Sara Lynn Blanken, John Rek, Emmanuel Arinaitwe, Bryan Greenhouse, Philip J Rosenthal, Moses R Kamya, Sarah G Staedke, Grant Dorsey

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Mapping residual transmission for malaria elimination by Robert C Reiner Jr, Arnaud Le Menach, Simon Kunene, Nyasatu Ntshalintshali, Michelle S Hsiang, T Alex Perkins, Bryan Greenhouse, Andrew J Tatem, Justin M Cohen, David L Smith

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Metagenomic next-generation sequencing to characterize potential etiologies of non-malarial fever in a cohort living in a high malaria burden area of Uganda. by Lusajo Mwakibete, Saki Takahashi, Vida Ahyong, Allison Black, John Rek, Isaac Ssewanyana, Moses Kamya, Grant Dorsey, Prasanna Jagannathan, Isabel Rodríguez-Barraquer, Cristina M Tato, Bryan Greenhouse

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Plasmodium falciparum serology: A comparison of two protein production methods for analysis of antibody responses by protein microarray. by Tate Oulton, Joshua Obiero, Isabel Rodriguez, Isaac Ssewanyana, Rebecca A Dabbs, Christine M Bachman, Bryan Greenhouse, Chris Drakeley, Phil L Felgner, Will Stone, Kevin K A Tetteh

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Plasmodium falciparum serology: A comparison of two protein production methods for analysis of antibody responses by protein microarray by Tate Oulton, Joshua Obiero, Isabel Rodriguez, Isaac Ssewanyana, Rebecca A. Dabbs, Christine M. Bachman, Bryan Greenhouse, Chris Drakeley, Phil L. Felgner, Will Stone, Kevin K. A. Tetteh

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Atypical B cells consist of subsets with distinct functional profiles by Raphael A. Reyes, Gayani Batugedara, Paramita Dutta, Ashley B. Reers, Rolando Garza, Isaac Ssewanyana, Prasanna Jagannathan, Margaret E. Feeney, Bryan Greenhouse, Sebastiaan Bol, Ferhat Ay, Evelien M. Bunnik

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The usefulness of rapid diagnostic tests in the new context of low malaria transmission in Zanzibar. by Delér Shakely, Kristina Elfving, Berit Aydin-Schmidt, Mwinyi I Msellem, Ulrika Morris, Rahila Omar, Xu Weiping, Max Petzold, Bryan Greenhouse, Kimberly A Baltzell, Abdullah S Ali, Anders Björkman, Andreas Mårtensson

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Genomic epidemiology demonstrates spatially clustered, local transmission of Plasmodium falciparum in forest-going populations in southern Lao PDR. by Ying-An Chen, Eric Neubauer Vickers, Andres Aranda-Diaz, Maxwell Murphy, Inna Gerlovina, Francois Rerolle, Emily Dantzer, Bouasy Hongvanthong, Hsiao-Han Chang, Andrew A Lover, Nicholas J Hathaway, Adam Bennett, Bryan Greenhouse

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A Molecular Analysis of Memory B Cell and Antibody Responses Against Plasmodium falciparum Merozoite Surface Protein 1 in Children and Adults From Uganda by S. Jake Gonzales, Kathleen N. Clarke, Gayani Batugedara, Rolando Garza, Ashley E. Braddom, Raphael A. Reyes, Isaac Ssewanyana, Isaac Ssewanyana, Kendra C. Garrison, Gregory C. Ippolito, Bryan Greenhouse, Sebastiaan Bol, Evelien M. Bunnik

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Quantification of anti-parasite and anti-disease immunity to malaria as a function of age and exposure by Isabel Rodriguez-Barraquer, Emmanuel Arinaitwe, Prasanna Jagannathan, Moses R Kamya, Phillip J Rosenthal, John Rek, Grant Dorsey, Joaniter Nankabirwa, Sarah G Staedke, Maxwell Kilama, Chris Drakeley, Isaac Ssewanyana, David L Smith, Bryan Greenhouse

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A micro-epidemiological analysis of febrile malaria in Coastal Kenya showing hotspots within hotspots by Philip Bejon, Thomas N Williams, Christopher Nyundo, Simon I Hay, David Benz, Peter W Gething, Mark Otiende, Judy Peshu, Mahfudh Bashraheil, Bryan Greenhouse, Teun Bousema, Evasius Bauni, Kevin Marsh, David L Smith, Steffen Borrmann

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Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections by Madhura Raghavan, Katrina L Kalantar, Elias Duarte, Noam Teyssier, Saki Takahashi, Andrew F Kung, Jayant V Rajan, John Rek, Kevin KA Tetteh, Chris Drakeley, Isaac Ssewanyana, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Joseph L DeRisi

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