UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein–DNA interactions by Bulyk, Martha L., Robasky, Kimberly

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UniPROBE: an online database of protein binding microarray data on protein–DNA interactions by Bulyk, Martha L., Newburger, Daniel E.

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Distinguishing direct versus indirect transcription factor–DNA interactions by Gordan, Raluca, Hartemink, Alexander J., Bulyk, Martha L.

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Bioinformatic and molecular investigation of Sirt3 expression by Swindell William R, Satterstrom F, Bulyk Martha L, Haigis Marcia C

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions by Barrera, Luis Alberto, Bulyk, Martha L., Hume, Maxwell A., Gisselbrecht, Stephen S.

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Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex by Siggers, Trevor, Duyzend, Michael H., Reddy, Jessica, Khan, Sidra, Bulyk, Martha L.

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Distant cis-regulatory elements in human skeletal muscle differentiation by McCord, Rachel P., Zhou, Vicky W., Yuh, Tiffany, Bulyk, Martha L.

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DNA-binding specificity changes in the evolution of forkhead transcription factors by Nakagawa, So, Gisselbrecht, Stephen S., Rogers, Julia M., Hartl, Daniel L., Bulyk, Martha L.

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DNA Sequence Preferences of Transcriptional Activators Correlate More Strongly than Repressors with Nucleosomes by Charoensawan, Varodom, Janga, Sarath Chandra, Bulyk, Martha L., Babu, M. Madan, Teichmann, Sarah A.

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Using protein design algorithms to understand the molecular basis of disease caused by protein–DNA interactions: the Pax6 example by Alibes, Andreu, Nadra, Alejandro D., De Masi, Federico, Bulyk, Martha L., Serrano, Luis, Stricher, Francois

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Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights by Gordan, Raluca, Zhu, Cong, Vedenko, Anastasia, Bulyk, Martha L., Murphy, Kevin F., McCord, Rachel P.

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Contribution of Distinct Homeodomain DNA Binding Specificities to Drosophila Embryonic Mesodermal Cell-Specific Gene Expression Programs by Busser, Brian W., Gisselbrecht, Stephen S., Shokri, Leila, Tansey, Terese R., Gamble, Caitlin E., Bulyk, Martha L., Michelson, Alan M.

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Context influences on TALE–DNA binding revealed by quantitative profiling by Rogers, Julia M., Reyon, Deepak, Sander, Jeffry D., Kellis, Manolis, Joung, J. Keith, Bulyk, Martha L., Barrera, Luis Alberto

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Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants by Masi, Federico De, Grove, Christian A., Vedenko, Anastasia, Alibes, Andreu, Gisselbrecht, Stephen S., Serrano, Luis, Walhout, Albertha J. M., Bulyk, Martha L.

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Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits by Wong, Daniel, Teixeira, Ana, Oikonomopoulos, Spyros, Humburg, Peter, Lone, Imtiaz N., Saliba, David, Siggers, Trevor, Bulyk, Martha L., Angelov, Dimitar, Dimitrov, Stefan, Udalova, Irina A., Ragoussis, Jiannis

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Predicting the binding preference of transcription factors to individual DNA k-mers by Bulyk, Martha L., Philippakis, Anthony A., Alleyne, Trevis M., Peña-Castillo, Lourdes, Badis, Gwenael, Talukder, Shaheynoor, Berger, Michael F., Gehrke, Andrew R., Morris, Quaid D., Hughes, Timothy R.

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Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences by Santos, Miguel A., Turinsky, Andrei L., Ong, Serene, Tsai, Jennifer, Berger, Michael F., Badis, Gwenael, Talukder, Shaheynoor, Gehrke, Andrew R., Hughes, Timothy R., Wodak, Shoshana J., Bulyk, Martha L.

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Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network by Busser, Brian W., Huang, Di, Rogacki, Kevin R., Lane, Elizabeth A., Shokri, Leila, Ni, Ting, Gamble, Caitlin E., Gisselbrecht, Stephen S., Zhu, Jun, Bulyk, Martha L., Ovcharenko, Ivan, Michelson, Alan M.

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LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors by Tao, Ting, Shi, Hui, Mariani, Luca, Abraham, Brian J, Durbin, Adam D, Zimmerman, Mark W, Powers, John T, Missios, Pavlos, Ross, Kenneth N, Perez-Atayde, Antonio R, Bulyk, Martha L, Young, Richard A, Daley, George Q, Look, A Thomas

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LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors by Tao, Ting, Shi, Hui, Mariani, Luca, Abraham, Brian J., Durbin, Adam D., Zimmerman, Mark W., Powers, John T., Missios, Pavlos, Ross, Kenneth N., Perez-Atayde, Antonio R., Bulyk, Martha L., Young, Richard A., Daley, George Q., Look, A. Thomas

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