Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico by Sanjay R. Mehta, Davey M. Smith, Celia Boukadida, Antoine Chaillon

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NS2 proteases from hepatitis C virus and related hepaciviruses share composite active sites and previously unrecognized intrinsic proteolytic activities. by Célia Boukadida, Matthieu Fritz, Brigitte Blumen, Marie-Laure Fogeron, François Penin, Annette Martin

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Impact of HIV-associated immunodeficiency on the enteric bacterial microbiome by Sandra Pinto Cardoso, Monserrat Chávez-Torres, Celia Boukadida, Daniela Garrido-Rodríguez, Amy Peralta-Prado, Gustavo Reyes-Terán

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Expansion of the enteric virome in untreated HIV infection by Celia Boukadida, Sandra Pinto-Cardoso, Ana Paola Carranco-Arenas, Monserrat Chávez-Torres, Daniela Garrido-Rodríguez, Amy Peralta-Prado, Gustavo Reyes-Terán

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Dysbiosis and structural disruption of the respiratory microbiota in COVID-19 patients with severe and fatal outcomes by Alejandra Hernández-Terán, Fidencio Mejía-Nepomuceno, María Teresa Herrera, Omar Barreto, Emma García, Manuel Castillejos, Celia Boukadida, Margarita Matias-Florentino, Alma Rincón-Rubio, Santiago Avila-Rios, Mario Mújica-Sánchez, Ricardo Serna-Muñoz, Eduardo Becerril-Vargas, Cristobal Guadarrama-Pérez, Víctor Hugo Ahumada-Topete, Sebastián Rodríguez-Llamazares, José Arturo Martínez-Orozco, Jorge Salas-Hernández, Rogelio Pérez-Padilla, Joel Armando Vázquez-Pérez

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Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City by Alejandra Hernández-Terán, Pamela Garcíadiego-Fossas, Marco Villanueva-Reza, Celia Boukadida, Blanca Taboada, Eduardo Porras, Victor Ahumada-Topete, Kathia Elizabeth Tapia-Diaz, Margarita Matías-Florentino, Marissa Pérez-García, Santiago Ávila-Ríos, Fidencio Mejía-Nepomuceno, Ricardo Serna-Muñoz, Fortunato Juárez-Hernández, María Eugenia Jiménez-Corona, Eduardo Becerril-Vargas, Omar Barreto, Jose Arturo Martínez-Orozco, Rogelio Pérez-Padilla, Carlos F. Arias, Joel Armando Vázquez-Pérez

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Two-year follow-up of the COVID-19 pandemic in Mexico by Antonio Loza, Rosa María Wong-Chew, María-Eugenia Jiménez-Corona, Selene Zárate, Susana López, Ricardo Ciria, Diego Palomares, Rodrigo García-López, Pavel Iša, Blanca Taboada, Mauricio Rosales, Celia Boukadida, Alfredo Herrera-Estrella, Nelly Selem Mojica, Xaira Rivera-Gutierrez, José Esteba Muñoz-Medina, Angel Gustavo Salas-Lais, Alejandro Sanchez-Flores, Joel Armando Vazquez-Perez, Carlos F. Arias, Rosa María Gutiérrez-Ríos

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Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease by Pavel Iša, Blanca Taboada, Rodrigo García-López, Celia Boukadida, José Ernesto Ramírez-González, Joel Armando Vázquez-Pérez, Alejandra Hernández-Terán, José Ángel Romero-Espinoza, José Esteban Muñoz-Medina, Concepción Grajales-Muñiz, Alma Rincón-Rubio, Margarita Matías-Florentino, Alejandro Sanchez-Flores, Edgar Mendieta-Condado, Gisela Barrera-Badillo, Susana López, Lucía Hernández-Rivas, Irma López-Martínez, Santiago Ávila-Ríos, Carlos F. Arias

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Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic by Blanca Taboada, Selene Zárate, Pavel Iša, Celia Boukadida, Joel Armando Vazquez-Perez, José Esteban Muñoz-Medina, José Ernesto Ramírez-González, Andreu Comas-García, Concepción Grajales-Muñiz, Alma Rincón-Rubio, Margarita Matías-Florentino, Alejandro Sanchez-Flores, Edgar Mendieta-Condado, Jerome Verleyen, Gisela Barrera-Badillo, Lucía Hernández-Rivas, Fidencio Mejía-Nepomuceno, José Arturo Martínez-Orozco, Eduardo Becerril-Vargas, Susana López, Irma López-Martínez, Santiago Ávila-Ríos, Carlos F. Arias

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Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico by Celia Boukadida, Blanca Taboada, Marina Escalera-Zamudio, Pavel Isa, José Ernesto Ramírez-González, Joel Armando Vazquez-Perez, José Esteban Muñoz-Medina, Concepción Grajales-Muñiz, Carolina González-Torres, Francisco Javier Gaytán-Cervantes, Alma Rincón-Rubio, Margarita Matías-Florentino, Héctor Esteban Paz-Juárez, Alejandro Sanchez-Flores, Edgar Mendieta-Condado, Gisela Barrera-Badillo, Lucía Hernández-Rivas, Susana López, Irma López-Martínez, Santiago Ávila-Ríos, Carlos F. Arias

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Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico by Hugo G Castelán-Sánchez, Luis Delaye, Rhys PD Inward, Simon Dellicour, Bernardo Gutierrez, Natalia Martinez de la Vina, Celia Boukadida, Oliver G Pybus, Guillermo de Anda Jáuregui, Plinio Guzmán, Marisol Flores-Garrido, Óscar Fontanelli, Maribel Hernández Rosales, Amilcar Meneses, Gabriela Olmedo-Alvarez, Alfredo Heriberto Herrera-Estrella, Alejandro Sánchez-Flores, José Esteban Muñoz-Medina, Andreu Comas-García, Bruno Gómez-Gil, Selene Zárate, Blanca Taboada, Susana López, Carlos F Arias, Moritz UG Kraemer, Antonio Lazcano, Marina Escalera Zamudio

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Antibody and Memory B-Cell Immunity in a Heterogeneously SARS-CoV-2-Infected and -Vaccinated Population by Eva Bednarski, Perla M. Del Rio Estrada, Justin DaSilva, Celia Boukadida, Fengwen Zhang, Yara A. Luna-Villalobos, Ximena Rodríguez-Rangel, Elvira Pitén-Isidro, Edgar Luna-García, Dafne Díaz Rivera, Dulce M. López-Sánchez, Daniela Tapia-Trejo, Maribel Soto-Nava, Myriam Astorga-Castañeda, José O. Martínez-Moreno, Guadalupe S. Urbina-Granados, José A. Jiménez-Jacinto, Francisco J. Serna Alvarado, Yerania E. Enriquez-López, Oliva López-Arellano, Gustavo Reyes-Teran, Paul D. Bieniasz, Santiago Avila-Rios, Theodora Hatziioannou

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Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico by Blanca Taboada, Selene Zárate, Rodrigo García-López, José Esteban Muñoz-Medina, Alejandro Sanchez-Flores, Alfredo Herrera-Estrella, Celia Boukadida, Bruno Gómez-Gil, Nelly Selem Mojica, Mauricio Rosales-Rivera, Angel Gustavo Salas-Lais, Rosa María Gutiérrez-Ríos, Antonio Loza, Xaira Rivera-Gutierrez, Joel Armando Vazquez-Perez, Margarita Matías-Florentino, Marissa Pérez-García, Santiago Ávila-Ríos, Juan Manuel Hurtado, Carla Ivón Herrera-Nájera, José de Jesús Núñez-Contreras, Brenda Sarquiz-Martínez, Víctor Eduardo García-Arias, María Guadalupe Santiago-Mauricio, Bernardo Martínez-Miguel, Julissa Enciso-Ibarra, Cristóbal Cháidez-Quiróz, Pavel Iša, Rosa María Wong-Chew, María-Eugenia Jiménez-Corona, Susana López, Carlos F. Arias

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The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico by Selene Zárate, Blanca Taboada, José Esteban Muñoz-Medina, Pavel Iša, Alejandro Sanchez-Flores, Celia Boukadida, Alfredo Herrera-Estrella, Nelly Selem Mojica, Mauricio Rosales-Rivera, Bruno Gómez-Gil, Angel Gustavo Salas-Lais, Clara Esperanza Santacruz-Tinoco, Héctor Montoya-Fuentes, Julio Elias Alvarado-Yaah, Gloria María Molina-Salinas, Gloria Elena Espinoza-Ayala, José Antonio Enciso-Moreno, Rosa María Gutiérrez-Ríos, Antonio Loza, Joaquín Moreno-Contreras, Rodrigo García-López, Xaira Rivera-Gutierrez, Andreu Comas-García, Rosa María Wong-Chew, Maria-Eugenia Jiménez-Corona, Rosa María del Angel, Joel Armando Vazquez-Perez, Margarita Matías-Florentino, Marissa Pérez-García, Santiago Ávila-Ríos, Hugo G. Castelán-Sánchez, Luis Delaye, León P. Martínez-Castilla, Marina Escalera-Zamudio, Susana López, Carlos F. Arias

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