Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis by Raviv, T. Riklin, Ljosa, V., Conery, Annie L., Ausubel, Frederick M., Carpenter, Anne E., Golland, Polina, Wahlby, C.

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Resolving clustered worms via probabilistic shape models by Wahlby, Carolina, Riklin-Raviv, Tammy, Ljosa, Vebjorn, Conery, Annie L., Golland, Polina, Ausubel, Frederick M., Carpenter, Anne E.

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Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging by Tomov, Martin L, O’Neil, Alison, Abbasi, Hamdah S, Cimini, Beth A, Carpenter, Anne E, Rubin, Lee L, Bathe, Mark

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Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging by Tomov, Martin L, O’Neil, Alison, Abbasi, Hamdah S, Cimini, Beth A, Carpenter, Anne E, Rubin, Lee L, Bathe, Mark

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CellProfiler Analyst: data exploration and analysis software for complex image-based screens by Papallo Adam, Lindquist Robert A, Wheeler Douglas B, Kang In, Jones Thouis R, Sabatini David M, Golland Polina, Carpenter Anne E

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Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging by Danielson, Eric, Perez de Arce, Karen, Cimini, Beth, Wamhoff, Eike-Christian, Singh, Shantanu, Cottrell, Jeffrey R, Carpenter, Anne E, Bathe, Mark

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Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging by Danielson, Eric, Perez de Arce, Karen, Cimini, Beth, Wamhoff, Eike-Christian, Singh, Shantanu, Cottrell, Jeffrey R, Carpenter, Anne E, Bathe, Mark

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High Content Image Analysis Identifies Novel Regulators of Synaptogenesis in a High-Throughput RNAi Screen of Primary Neurons by Logan, David J., Saulnier, Jessica, Lam, Daniel, Johnson, Caroline, Root, David E., Carpenter, Anne E., Sabatini, Bernardo L., Nieland, Thomas J

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Identification of small molecules for human hepatocyte expansion and iPS differentiation by Shan, Jing, Ross, Nathan T., Logan, David J., Thomas, David, Duncan, Stephen A., North, Trista E., Goessling, Wolfram, Carpenter, Anne E., Schwartz, Robert E., Bhatia, Sangeeta N

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A Microscale Human Liver Platform that Supports the Hepatic Stages of Plasmodium falciparum and vivax by March-Riera, Sandra, Ng, Shengyong, Velmurugan, Soundarapandian, Galstian, Ani, Shan, Jing, Logan, David J., Carpenter, Anne E., Thomas, David, Sim, B. Kim Lee, Mota, Maria M., Hoffman, Stephen L.

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CellProfiler: image analysis software for identifying and quantifying cell phenotypes by Carpenter, Anne E., Jones, Thouis R., Lamprecht, Michael R., Clarke, Colin, Kang, In Han, Friman, Ola, Guertin, David A., Chang, Joo Han, Lindquist, Robert A., Moffat, Jason, Golland, Polina, Sabatini, David

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An image analysis toolbox for high-throughput C. elegans assays by Kamentsky, Lee, Liu, Zihan H., Riklin-Raviv, Tammy, Conery, Annie L., O'Rourke, Eyleen J., Sokolnicki, Katherine L., Visvikis, Orane, Ljosa, Vebjorn, Irazoqui, Javier E., Golland, Polina, Ruvkun, Gary, Ausubel, Frederick M., Carpenter, Anne E., Wahlby, Carolina

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mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway by Peterson, Timothy R., Sengupta, Shomit S., Harris, Thurl E., Carpenter, Anne E., Kang, Seong A., Balderas, Eric, Guertin, David A., Madden, Katherine L., Finck, Brian N., Sabatini, David M., Kang, Seong A., Peterson, Timothy Richard, Sengupta, Shomit, Sabatini, David

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Keras R-CNN: library for cell detection in biological images using deep neural networks by Hung, Jane, Goodman, Allen, Ravel, Deepali, Lopes, Stefanie C P, Rangel, Gabriel W, Nery, Odailton A, Malleret, Benoit, Nosten, Francois, Lacerda, Marcus V G, Ferreira, Marcelo U, Rénia, Laurent, Duraisingh, Manoj T, Costa, Fabio T M, Marti, Matthias, Carpenter, Anne E

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Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1–S6K pathway signaling by Lindquist, Robert A., Ottina, Kathleen, Wheeler, Douglas B., Hsu, Peggy P., Thoreen, Carson C., Guertin, David A., Ali, Siraj M., Sengupta, Shomit, Shaul, Yoav D., Lamprecht, Michael R., Madden, Katherine L., Papallo, Adam R., Jones, Thouis R., Sabatini, David M., Carpenter, Anne E.

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The bromodomain protein Brd4 insulates chromatin from DNA damage signalling by Floyd, Scott R., Pacold, Michael E., Huang, Qiuying, Clarke, Scott M., Rameseder, Jonathan, Lee, Michael J., Blake, Emily J., Fydrych, Anna, Ho, Richard, Del Rosario, Amanda M., Root, David E., Carpenter, Anne E., Hahn, William C., Sabatini, David M., Chen, Clark C., White, Forest M., Bradner, James E., Yaffe, Michael B., Lam, Fred Chiu-Lai, Cannell, Ian Gordon, Bryson, Bryan D., Greenberger, Benjamin Aaron, Chen, Grace, Maffa, Amanda D.

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ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State by Chudnovsky, Yakov, Kim, Dohoon, Zheng, Siyuan, Whyte, Warren A., Bansal, Mukesh, Bray, Mark-Anthony, Gopal, Shuba, Theisen, Matthew A., Bilodeau, Steve, Thiru, Prathapan, Muffat, Julien, Yilmaz, Omer, Mitalipova, Maya, Woolard, Kevin, Lee, Jeongwu, Nishimura, Riko, Sakata, Nobuo, Fine, Howard A., Carpenter, Anne E., Silver, Serena J., Verhaak, Roel G.W., Califano, Andrea, Young, Richard A., Ligon, Keith L., Mellinghoff, Ingo K., Root, David E., Hahn, William C., Chheda, Milan G., Sabatini, David, Whyte, Warren Anthony

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