Proteome analysis of Borrelia burgdorferi response to environmental change. by Thomas E Angel, Benjamin J Luft, Xiaohua Yang, Carrie D Nicora, David G Camp, Jon M Jacobs, Richard D Smith

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Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803. by Michelle Liberton, William B Chrisler, Carrie D Nicora, Ronald J Moore, Richard D Smith, David W Koppenaal, Himadri B Pakrasi, Jon M Jacobs

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Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis by Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas, Bin Yang

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Oligosaccharide production and signaling correlate with delayed flowering in an Arabidopsis genotype grown and selected in high [CO2]. by Hannah Kinmonth-Schultz, Stephen Michael Walker, Kerem Bingol, David W Hoyt, Young-Mo Kim, Lye Meng Markillie, Hugh D Mitchell, Carrie D Nicora, Ronald Taylor, Joy K Ward

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Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1 by Gina Chaput, Andrew F. Billings, Lani DeDiego, Roberto Orellana, Joshua N. Adkins, Carrie D. Nicora, Young-Mo Kim, Rosalie Chu, Blake Simmons, Kristen M. DeAngelis, Daniel Cullen

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Parallel Multi-Omics in High-Risk Subjects for the Identification of Integrated Biomarker Signatures of Type 1 Diabetes by Oscar Alcazar, Luis F. Hernandez, Ernesto S. Nakayasu, Carrie D. Nicora, Charles Ansong, Michael J. Muehlbauer, James R. Bain, Ciara J. Myer, Sanjoy K. Bhattacharya, Peter Buchwald, Midhat H. Abdulreda

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From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem by Lily Khadempour, Jennifer E. Kyle, Bobbie-Jo M. Webb-Robertson, Carrie D. Nicora, Francesca B. Smith, Richard D. Smith, Mary S. Lipton, Cameron R. Currie, Erin S. Baker, Kristin E. Burnum-Johnson

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Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia by Coco Koedooder, Futing Zhang, Siyuan Wang, Subhajit Basu, Sheean T. Haley, Nikola Tolic, Carrie D. Nicora, Tijana Glavina del Rio, Sonya T. Dyhrman, Martha Gledhill, Rene M. Boiteau, Maxim Rubin-Blum, Yeala Shaked

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Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis by Tim L. Jeffers, Samuel O. Purvine, Carrie D. Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D. Gallaher, Alice Dohnalkova, Sabeeha S. Merchant, Mary Lipton, Krishna K. Niyogi, Melissa S. Roth

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Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study. by Amy E Bryant, Michael J Aldape, Clifford R Bayer, Eva J Katahira, Laura Bond, Carrie D Nicora, Thomas L Fillmore, Therese R W Clauss, Thomas O Metz, Bobbie-Jo Webb-Robertson, Dennis L Stevens

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Targeted curation of the gut microbial gene content modulating human cardiovascular disease by Mikayla A. Borton, Michael Shaffer, David W. Hoyt, Ruisheng Jiang, Jared B. Ellenbogen, Samuel Purvine, Carrie D. Nicora, Elizabeth K. Eder, Allison R. Wong, A. George Smulian, Mary S. Lipton, Joseph A. Krzycki, Kelly C. Wrighton

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Interrogating the role of the milk microbiome in mastitis in the multi-omics era by Sneha P. Couvillion, Katie E. Mostoller, Janet E. Williams, Ryan M. Pace, Izabel L. Stohel, Haley K. Peterson, Carrie D. Nicora, Ernesto S. Nakayasu, Bobbie-Jo M. Webb-Robertson, Mark A. McGuire, Michelle K. McGuire, Thomas O. Metz

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Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments by Josué A. Rodríguez-Ramos, Mikayla A. Borton, Bridget B. McGivern, Garrett J. Smith, Lindsey M. Solden, Michael Shaffer, Rebecca A. Daly, Samuel O. Purvine, Carrie D. Nicora, Elizabeth K. Eder, Mary Lipton, David W. Hoyt, James C. Stegen, Kelly C. Wrighton

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Elucidating regulatory processes of intense physical activity by multi-omics analysis by Ernesto S. Nakayasu, Marina A. Gritsenko, Young-Mo Kim, Jennifer E. Kyle, Kelly G. Stratton, Carrie D. Nicora, Nathalie Munoz, Kathleen M. Navarro, Daniel Claborne, Yuqian Gao, Karl K. Weitz, Vanessa L. Paurus, Kent J. Bloodsworth, Kelsey A. Allen, Lisa M. Bramer, Fernando Montes, Kathleen A. Clark, Grant Tietje, Justin Teeguarden, Kristin E. Burnum-Johnson

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Regulation of β-cell death by ADP-ribosylhydrolase ARH3 via lipid signaling in insulitis by Soumyadeep Sarkar, Cailin Deiter, Jennifer E. Kyle, Michelle A. Guney, Dylan Sarbaugh, Ruichuan Yin, Xiangtang Li, Yi Cui, Mireia Ramos-Rodriguez, Carrie D. Nicora, Farooq Syed, Jonas Juan-Mateu, Charanya Muralidharan, Lorenzo Pasquali, Carmella Evans-Molina, Decio L. Eizirik, Bobbie-Jo M. Webb-Robertson, Kristin Burnum-Johnson, Galya Orr, Julia Laskin, Thomas O. Metz, Raghavendra G. Mirmira, Lori Sussel, Charles Ansong, Ernesto S. Nakayasu

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PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements by Aivett Bilbao, Nathalie Munoz, Joonhoon Kim, Daniel J. Orton, Yuqian Gao, Kunal Poorey, Kyle R. Pomraning, Karl Weitz, Meagan Burnet, Carrie D. Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A. Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D. Smith, Joshua K. Michener, John M. Gladden, Erin S. Baker, Christopher J. Petzold, Young-Mo Kim, Alex Apffel, Jon K. Magnuson, Kristin E. Burnum-Johnson

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A compendium of multi-omics data illuminating host responses to lethal human virus infections by Amie J. Eisfeld, Lindsey N. Anderson, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff Smith, Larissa B. Thackray, Qing Tan, Amy C. Sims, Vineet D. Menachery, Alexandra Schäfer, Timothy P. Sheahan, Adam S. Cockrell, Kelly G. Stratton, Bobbie-Jo M. Webb-Robertson, Jennifer E. Kyle, Kristin E. Burnum-Johnson, Young-Mo Kim, Carrie D. Nicora, Zuleyma Peralta, Alhaji U. N’jai, Foday Sahr, Harm van Bakel, Michael S. Diamond, Ralph S. Baric, Thomas O. Metz, Richard D. Smith, Yoshihiro Kawaoka, Katrina M. Waters

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Multi-omics of NET formation and correlations with CNDP1, PSPB, and L-cystine levels in severe and mild COVID-19 infections by Lisa M. Bramer, Robert D. Hontz, Amie J. Eisfeld, Amy C. Sims, Young-Mo Kim, Kelly G. Stratton, Carrie D. Nicora, Marina A. Gritsenko, Athena A. Schepmoes, Osamu Akasaka, Michiko Koga, Takeya Tsutsumi, Morio Nakamura, Ichiro Nakachi, Rie Baba, Hiroki Tateno, Shoji Suzuki, Hideaki Nakajima, Hideaki Kato, Kazunari Ishida, Makoto Ishii, Yoshifumi Uwamino, Keiko Mitamura, Vanessa L. Paurus, Ernesto S. Nakayasu, Isaac K. Attah, Andrew G. Letizia, Katrina M. Waters, Thomas O. Metz, Karen Corson, Yoshihiro Kawaoka, Vincent R. Gerbasi, Hiroshi Yotsuyanagi, Kiyoko Iwatsuki-Horimoto

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